Equivalence class NR_4.0_20721.3 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4V9B|1|AC (rep) | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
| 2 | 4V95|1|AV | P-site fMet-tRNA, mRNA | Thermus thermophilus | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-07-09 |
| 3 | 4V8X|1|CV | transfer RNA, BACTERIAL TOXIN YOEB | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
| 4 | 4V9A|1|AC | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 5 | 4V9N|1|AW | P-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3') | Thermus thermophilus | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 2014-07-09 |
| 6 | 4V9N|1|CW | P-site tRNA-fMet, messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3') | Thermus thermophilus | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 2014-07-09 |
| 7 | 3J9Z|1|S6 | P-tRNA | Thermus thermophilus | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 2015-07-01 |
| 8 | 4V8X|1|AV | transfer RNA, 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3' | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
| 9 | 4V7J|1|Av | RNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3') | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 10 | 4V7J|1|Bv | RNA (77-MER), RNA (5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*A*AP*AP*AP*AP*UP*GP*(OMU)P*(A2M)P*(OMG)P*AP*AP*AP*A)-3') | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 11 | 4V9B|1|CC | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
| 12 | 4V95|1|CV | P-site fMet-tRNA, mRNA | Thermus thermophilus | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 2014-07-09 |
| 13 | 4V7K|1|Bv | RNA (77-MER), RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3') | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 2014-07-09 |
| 14 | 4WT8|1|C4 | P site trNA, mRNA | Thermus thermophilus | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 2015-01-21 |
| 15 | 4V9A|1|CC | TRNA-FMET, MRNA | Thermus thermophilus | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 16 | 4L47|1|QV | P-site tRNA fMet, messenger RNA, A-site ASL SufA6 | Thermus thermophilus | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 2014-08-06 |
| 17 | 3JA1|1|S2 | P/E-tRNA, mRNA | Thermus thermophilus | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 2015-07-01 |
| 18 | 4L47|1|XV | P-site tRNA fMet, messenger RNA, A-site ASL SufA6 | Thermus thermophilus | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 2014-08-06 |
| 19 | 4V7K|1|Av | RNA (77-MER), RNA (5'-R(*A*AP*GP*UP*AP*AP*AP*AP*AP*UP*GP*UP*A*(CCC))-3') | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 2014-07-09 |
| 20 | 4V8U|1|AW | RNA | Thermus thermophilus | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 2014-07-09 |
| 21 | 4V8U|1|CW | RNA | Thermus thermophilus | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 2014-07-09 |
| 22 | 4V4J|1|z | P-site tRNAfMET, MRNA | Thermus thermophilus | Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | X-RAY DIFFRACTION | 3.83 | 2014-07-09 |
| 23 | 4V9B|1|AD | TRNA-FMET | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
| 24 | 4V7K|1|Bw | RNA (77-MER) | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 2014-07-09 |
| 25 | 4V8X|1|CW | transfer RNA | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
| 26 | 4V5A|1|AW | TRNA-FMET | Escherichia coli | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 2014-07-09 |
| 27 | 4V7K|1|Aw | RNA (77-MER) | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 2014-07-09 |
| 28 | 4V8X|1|AW | transfer RNA | Thermus thermophilus | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 2014-07-09 |
| 29 | 4V7J|1|Bw | RNA (77-MER) | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 30 | 4V7J|1|Aw | RNA (77-MER) | Thermus thermophilus | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 2014-07-09 |
| 31 | 4V5A|1|CW | TRNA-FMET | Escherichia coli | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 2014-07-09 |
| 32 | 4V9B|1|CD | TRNA-FMET | Thermus thermophilus | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 2014-07-09 |
Release history
| Release | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_20721.3 | NR_all_20721.2 | 2.30 | (30) 4V9A|1|AC, 4V7K|1|Aw, 4V9B|1|AC, 4V8X|1|AV, 4V7J|1|Av, 4V9N|1|CW, 4V7K|1|Bv, 4L47|1|XV, 4V9B|1|AD, 4V8X|1|CV, 4V7J|1|Aw, 4V8X|1|CW, 4V7J|1|Bw, 4V8U|1|AW, 4V4J|1|z, 4V9B|1|CD, 4V95|1|CV, 4V7K|1|Av, 4V9A|1|CC, 4V8U|1|CW, 4V5A|1|CW, 4V9N|1|AW, 4L47|1|QV, 4V8X|1|AW, 4WT8|1|C4, 4V7K|1|Bw, 4V9B|1|CC, 4V7J|1|Bv, 4V95|1|AV, 4V5A|1|AW | (2) 3J9Z|1|S6, 3JA1|1|S2 | (3) 4V5M|1|AV, 4V68|1|AV, 4V5N|1|AV |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3J9Z|1|S6 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 77 |
| 2 | 4V9B|1|AC | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 |
| 3 | 4V9A|1|AC | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 77 |
| 4 | 4V9B|1|CC | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 |
| 5 | 4V9A|1|CC | Crystal Structure of the 70S ribosome with tetracycline. | X-RAY DIFFRACTION | 3.3 | 77 |
| 6 | 4WT8|1|C4 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 77 |
| 7 | 4L47|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 77 |
| 8 | 4L47|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 3.22 | 77 |
| 9 | 4V95|1|AV | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 |
| 10 | 4V9N|1|AW | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 77 |
| 11 | 4V9N|1|CW | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | X-RAY DIFFRACTION | 3.4 | 77 |
| 12 | 4V7J|1|Bv | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 76 |
| 13 | 4V7K|1|Bv | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 76 |
| 14 | 4V7K|1|Av | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 76 |
| 15 | 4V7J|1|Av | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 76 |
| 16 | 4V95|1|CV | Crystal structure of YAEJ bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 |
| 17 | 4V4J|1|z | Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | X-RAY DIFFRACTION | 3.83 | 77 |
| 18 | 4V8X|1|CV | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 77 |
| 19 | 4V8X|1|AV | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 76 |
| 20 | 4V8U|1|AW | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 |
| 21 | 4V8U|1|CW | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 |
| 22 | 4V5A|1|AW | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 76 |
| 23 | 4V5A|1|CW | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 76 |
| 24 | 4V7K|1|Aw | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 77 |
| 25 | 4V8X|1|AW | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 77 |
| 26 | 4V7J|1|Aw | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 77 |
| 27 | 4V8X|1|CW | Structure of Thermus thermophilus ribosome | X-RAY DIFFRACTION | 3.35 | 77 |
| 28 | 4V7J|1|Bw | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | X-RAY DIFFRACTION | 3.3 | 77 |
| 29 | 4V7K|1|Bw | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | X-RAY DIFFRACTION | 3.6 | 77 |
| 30 | 4V9B|1|CD | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 |
| 31 | 4V9B|1|AD | Crystal Structure of the 70S ribosome with tigecycline. | X-RAY DIFFRACTION | 3.1 | 77 |
| 32 | 3JA1|1|S2 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 77 |