BGSU RNA Site //

Equivalence class NR_4.0_34359.5 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
12NVQ|1|R (rep)5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructSyntheticRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-ray diffraction2.92006-12-12
26UPZ|1|RRNAsynthetic constructSyntheticRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3X-ray diffraction3.12020-06-10
32NVX|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-ray diffraction3.62006-12-19
42E2I|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-ray diffraction3.412006-12-19
56UQ0|1|RRNAsynthetic constructSyntheticRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4X-ray diffraction3.562020-06-10
67KEE|1|RRNAsynthetic constructSyntheticRNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-siteX-ray diffraction3.452021-06-23
72E2H|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-ray diffraction3.952006-12-12
87KED|1|RRNAsynthetic constructSyntheticRNA polymerase II elongation complex with unnatural base dTPT3X-ray diffraction3.62021-06-23
97KEF|1|RRNAsynthetic constructSyntheticRNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing stateX-ray diffraction3.892021-06-23
101SFO|1|RRNA STRANDRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-ray diffraction3.612004-03-02
111R9T|1|RRNA strandRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-ray diffraction3.52004-11-16
122YU9|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructSyntheticRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-ray diffraction3.42007-04-24
136H67|1|RRNASaccharomyces cerevisiaeEukaryaYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)Electron microscopy3.62018-08-29

Release history

Release3.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.198
Date2021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_34359.5NR_4.0_34359.43.184(10) 6UPZ|1|R, 6H67|1|R, 2YU9|1|R, 2NVX|1|R, 2NVQ|1|R, 2E2I|1|R, 2E2H|1|R, 1SFO|1|R, 1R9T|1|R, 6UQ0|1|R(3) 7KEF|1|R, 7KEE|1|R, 7KED|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_34359.5NR_4.0_34359.63.199(13) 7KEF|1|R, 7KEE|1|R, 7KED|1|R, 6UQ0|1|R, 6UPZ|1|R, 6H67|1|R, 2YU9|1|R, 2NVX|1|R, 2NVQ|1|R, 2E2I|1|R, 2E2H|1|R, 1SFO|1|R, 1R9T|1|R(0) (1) 7OO3|1|P

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17KEF|1|RRNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing stateX-RAY DIFFRACTION3.8910
22E2H|1|RRNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.9510
32NVX|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.610
42E2I|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.4110
52YU9|1|RRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.410
62NVQ|1|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.910
76UQ0|1|RRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4X-RAY DIFFRACTION3.569
87KED|1|RRNA polymerase II elongation complex with unnatural base dTPT3X-RAY DIFFRACTION3.610
97KEE|1|RRNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-siteX-RAY DIFFRACTION3.4510
106H67|1|RYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)ELECTRON MICROSCOPY3.69
111SFO|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.6110
121R9T|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.510
136UPZ|1|RRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3X-RAY DIFFRACTION3.110