BGSU RNA Site //

Equivalence class NR_4.0_45043.4 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
14WRT|1|V+ 4WRT|1|R (rep)Influenza virus polymerase vRNA promoter 5' end, Influenza virus polymerase vRNA promoter 3' endInfluenza B virusVirusesCrystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2)X-ray diffraction2.72014-11-19
26QCW|1|V+ 6QCW|1|R+ 6QCW|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*CP*AP*UP*AP*AP*UP*AP*G)-3')synthetic constructSyntheticCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primerX-ray diffraction2.882019-06-05
36QCX|1|V+ 6QCX|1|R+ 6QCX|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*GP*C)-3')synthetic constructSyntheticCrystal structure of influenza B polymerase initiation state with capped 15-mer RNA primerX-ray diffraction3.082019-06-05
46QCV|1|V+ 6QCV|1|R+ 6QCV|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*G)-3')synthetic constructSyntheticCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTPX-ray diffraction3.242019-06-05
54WSA|1|V+ 4WSA|1|RInfluenza B vRNA promoter 5' end, Influenza B vRNA promoter 3' endInfluenza B virusVirusesCrystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form)X-ray diffraction3.42014-11-19
65M3J|1|V+ 5M3J|1|RRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3')Influenza B virusVirusesInfluenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTDX-ray diffraction3.52016-12-21
75MSG|1|V+ 5MSG|1|RRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*U)-3')Influenza B virusVirusesInfluenza B polymerase bound to vRNA promoter and capped RNA primerX-ray diffraction3.82017-02-08
86T0N|1|V+ 6T0N|1|R5' vRNA, 3' vRNAInfluenza B virusVirusesBat Influenza A polymerase pre-initiation complexElectron microscopy2.542020-04-15
96QCS|1|V+ 6QCS|1|R5 end, 3 endInfluenza B virusVirusesInfluenza B polymerase pre-initiation complexElectron microscopy3.12019-06-05
107Z43|1|VVV+ 7Z43|1|RRRRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*CP*CP*UP*GP*CP*U)-3')Influenza B virusVirusesInfluenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2BX-ray diffraction3.1232022-05-11

Release history

Release3.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.262
Date2022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-21

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_45043.4NR_4.0_45043.33.230(9) 6T0N|1|V+6T0N|1|R, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCS|1|V+6QCS|1|R, 5MSG|1|V+5MSG|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R(1) 7Z43|1|VVV+7Z43|1|RRR(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_45043.4NR_4.0_14145.13.263(10) 7Z43|1|VVV+7Z43|1|RRR, 4WRT|1|V+4WRT|1|R, 5M3J|1|V+5M3J|1|R, 6QCS|1|V+6QCS|1|R, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 5MSG|1|V+5MSG|1|R, 4WSA|1|V+4WSA|1|R, 6T0N|1|V+6T0N|1|R, 6QCW|1|V+6QCW|1|R+6QCW|1|M(0) (9) 7R0E|1|V+7R0E|1|R+7R0E|1|M, 7R1F|1|V, 7QTL|1|V, 6SZV|1|V, 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|U, 6T0V|1|V, 6QCT|1|V, 7ZPL|1|V

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16QCV|1|V+6QCV|1|R+6QCV|1|MCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTPX-RAY DIFFRACTION3.2414
26QCX|1|V+6QCX|1|R+6QCX|1|MCrystal structure of influenza B polymerase initiation state with capped 15-mer RNA primerX-RAY DIFFRACTION3.0814
36QCW|1|V+6QCW|1|R+6QCW|1|MCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primerX-RAY DIFFRACTION2.8814
47Z43|1|VVV+7Z43|1|RRRInfluenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2BX-RAY DIFFRACTION3.12314
55MSG|1|V+5MSG|1|RInfluenza B polymerase bound to vRNA promoter and capped RNA primerX-RAY DIFFRACTION3.814
65M3J|1|V+5M3J|1|RInfluenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTDX-RAY DIFFRACTION3.514
74WSA|1|V+4WSA|1|RCrystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form)X-RAY DIFFRACTION3.414
86QCS|1|V+6QCS|1|RInfluenza B polymerase pre-initiation complexELECTRON MICROSCOPY3.114
94WRT|1|V+4WRT|1|RCrystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2)X-RAY DIFFRACTION2.714
106T0N|1|V+6T0N|1|RBat Influenza A polymerase pre-initiation complexELECTRON MICROSCOPY2.5414