Equivalence class NR_all_38966.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6JDV|1|B (rep) | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in catalytic state | X-ray diffraction | 3.1 | 2019-11-06 |
| 2 | 6JE4|1|F | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 2019-11-06 |
| 3 | 6KC8|1|B | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of WT Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in post-cleavage state | X-ray diffraction | 2.9 | 2019-11-06 |
| 4 | 6JE4|1|L | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 2019-11-06 |
| 5 | 6JE4|1|P | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 2019-11-06 |
| 6 | 6JE4|1|B | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.07 | 2019-11-06 |
| 7 | 6JE3|1|B | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) with 5 nt overhang | X-ray diffraction | 2.93 | 2019-11-06 |
| 8 | 6JE9|1|B | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.46 | 2019-11-06 |
| 9 | 6JFU|1|B | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) | X-ray diffraction | 3.2 | 2019-11-06 |
| 10 | 6JE9|1|D | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-ray diffraction | 3.46 | 2019-11-06 |
| 11 | 6KC7|1|B | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in seed-base paring state | X-ray diffraction | 3.3 | 2019-11-06 |
| 12 | 6JDQ|1|B | CRISPR RNA direct repeat element | sgRNA | synthetic construct | Synthetic | RF01344 | Crystal structure of Nme1Cas9 in complex with sgRNA | X-ray diffraction | 2.95 | 2019-11-06 |
| 13 | 8HJ4|1|B | sgRNA | Neisseria meningitidis 8013 | CryoEM structure of an anti-CRISPR protein AcrIIC5 bound to Nme1Cas9-sgRNA complex | Electron microscopy | 3.1 | 2023-01-25 |
Release history
| Release | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8HJ4|1|B | CryoEM structure of an anti-CRISPR protein AcrIIC5 bound to Nme1Cas9-sgRNA complex | ELECTRON MICROSCOPY | 3.1 | 113 |
| 2 | 6JE4|1|L | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 133 |
| 3 | 6JE4|1|F | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 132 |
| 4 | 6JE4|1|P | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 130 |
| 5 | 6JE4|1|B | Crystal structure of Nme1Cas9-sgRNA-dsDNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.07 | 132 |
| 6 | 6JDQ|1|B | Crystal structure of Nme1Cas9 in complex with sgRNA | X-RAY DIFFRACTION | 2.95 | 117 |
| 7 | 6JE9|1|D | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.46 | 113 |
| 8 | 6JE9|1|B | Crystal structure of Nme1Cas9-sgRNA dimer mediated by double protein inhibitor AcrIIC3 monomers | X-RAY DIFFRACTION | 3.46 | 115 |
| 9 | 6KC7|1|B | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in seed-base paring state | X-RAY DIFFRACTION | 3.3 | 111 |
| 10 | 6KC8|1|B | Crystal structure of WT Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in post-cleavage state | X-RAY DIFFRACTION | 2.9 | 130 |
| 11 | 6JDV|1|B | Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in catalytic state | X-RAY DIFFRACTION | 3.1 | 143 |
| 12 | 6JE3|1|B | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) with 5 nt overhang | X-RAY DIFFRACTION | 2.93 | 117 |
| 13 | 6JFU|1|B | Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) | X-RAY DIFFRACTION | 3.2 | 105 |