1Q8N Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1Q8N_001 | 1/A/14:19 | GNRA Not in a motif group | geometric HL_4V9F_045 HL_42097.1 | |
| HL_1Q8N_002 | 2/A/14:19 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_1Q8N_003 | 3/A/14:19 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_1Q8N_004 | 4/A/14:19 | GNRA Not in a motif group | geometric HL_4V9F_045 HL_42097.1 | |
| HL_1Q8N_005 | 5/A/14:19 | GNRA Not in a motif group | geometric HL_4V9F_045 HL_42097.1 | |
| HL_1Q8N_006 | 6/A/14:19 | GNRA Not in a motif group | geometric HL_5FQ5_001 HL_42097.1 | |
| HL_1Q8N_007 | 7/A/14:19 | GNRA Not in a motif group | geometric HL_6JDV_001 HL_42097.1 | |
| HL_1Q8N_008 | 8/A/14:19 | GNRA Not in a motif group | geometric HL_5FQ5_001 HL_42097.1 | |
| HL_1Q8N_009 | 9/A/14:19 | GNRA Not in a motif group | geometric HL_4V9F_045 HL_42097.1 | |
| HL_1Q8N_010 | 10/A/14:19 | GNRA Not in a motif group | geometric HL_4V9F_045 HL_42097.1 | |
| HL_1Q8N_011 | 11/A/14:19 | GNRA Not in a motif group | geometric HL_4V9F_045 HL_42097.1 | |
| HL_1Q8N_012 | 12/A/14:19 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_1Q8N_013 | 13/A/14:19 | GNRA Not in a motif group | geometric HL_5FQ5_001 HL_42097.1 | |
| HL_1Q8N_014 | 14/A/14:19 | GNRA Not in a motif group | geometric HL_6JDV_001 HL_42097.1 | |
| HL_1Q8N_015 | 15/A/14:19 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_1Q8N_016 | 16/A/14:19 | GNRA Not in a motif group | geometric HL_4V9F_045 HL_42097.1 | |
| HL_1Q8N_017 | 17/A/14:19 | GNRA Not in a motif group | geometric HL_5FQ5_001 HL_42097.1 | |
| HL_1Q8N_018 | 18/A/14:19 | GNRA Not in a motif group | geometric HL_6JDV_001 HL_42097.1 | |
| HL_1Q8N_019 | 19/A/14:19 | GNRA Not in a motif group | geometric HL_6JDV_001 HL_42097.1 | |
| HL_1Q8N_020 | 20/A/14:19 | GNRA Not in a motif group | geometric HL_4V9F_045 HL_42097.1 | |
| HL_1Q8N_021 | 21/A/14:19 | GNRA Not in a motif group | geometric HL_5FQ5_001 HL_42097.1 | |
| HL_1Q8N_022 | 22/A/14:19 | GNRA Not in a motif group | geometric HL_4V9F_045 HL_42097.1 | |
| HL_1Q8N_023 | 23/A/14:19 | GNRA Not in a motif group | geometric HL_5FQ5_001 HL_42097.1 | |
| HL_1Q8N_024 | 24/A/14:19 | GNRA Not in a motif group | geometric HL_6JDV_001 HL_42097.1 | |
| HL_1Q8N_025 | 25/A/14:19 | GNRA Not in a motif group | geometric HL_6JDV_001 HL_42097.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1Q8N_001 | 1/A/1:3, 1/A/36:38 | No text annotation Not in a motif group | geometric IL_4V88_448 IL_10023.1 | |
| IL_1Q8N_002 | 1/A/6:7, 1/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_003 | 1/A/8:10, 1/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_005 | 2/A/6:7, 2/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_006 | 2/A/8:10, 2/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_008 | 3/A/6:7, 3/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_009 | 3/A/8:10, 3/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_011 | 4/A/6:7, 4/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_012 | 4/A/8:10, 4/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_014 | 5/A/6:7, 5/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_015 | 5/A/8:10, 5/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_017 | 6/A/6:7, 6/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_018 | 6/A/8:10, 6/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_020 | 7/A/6:7, 7/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_021 | 7/A/8:10, 7/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_023 | 8/A/6:7, 8/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_024 | 8/A/8:10, 8/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_026 | 9/A/6:7, 9/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_027 | 9/A/8:10, 9/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_029 | 10/A/6:7, 10/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_030 | 10/A/8:10, 10/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_032 | 11/A/6:7, 11/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_033 | 11/A/8:10, 11/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_035 | 12/A/6:7, 12/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_036 | 12/A/8:10, 12/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_038 | 13/A/6:7, 13/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_039 | 13/A/8:10, 13/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_041 | 14/A/6:7, 14/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_042 | 14/A/8:10, 14/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_044 | 15/A/6:7, 15/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_045 | 15/A/8:10, 15/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_047 | 16/A/6:7, 16/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_048 | 16/A/8:10, 16/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_050 | 17/A/6:7, 17/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_051 | 17/A/8:10, 17/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_053 | 18/A/6:7, 18/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_054 | 18/A/8:10, 18/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_056 | 19/A/6:7, 19/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_057 | 19/A/8:10, 19/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_059 | 20/A/6:7, 20/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_060 | 20/A/8:10, 20/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_062 | 21/A/6:7, 21/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_063 | 21/A/8:10, 21/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_065 | 22/A/6:7, 22/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_066 | 22/A/8:10, 22/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_068 | 23/A/6:7, 23/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_069 | 23/A/8:10, 23/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_071 | 24/A/6:7, 24/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_072 | 24/A/8:10, 24/A/23:28 | No text annotation Not in a motif group | ||
| IL_1Q8N_074 | 25/A/6:7, 25/A/29:33 | No text annotation Not in a motif group | ||
| IL_1Q8N_075 | 25/A/8:10, 25/A/23:28 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1Q8N_004 | No text annotation | ||
| IL_1Q8N_007 | No text annotation | ||
| IL_1Q8N_010 | No text annotation | ||
| IL_1Q8N_013 | No text annotation | ||
| IL_1Q8N_016 | No text annotation | ||
| IL_1Q8N_019 | No text annotation | ||
| IL_1Q8N_022 | No text annotation | ||
| IL_1Q8N_025 | No text annotation | ||
| IL_1Q8N_028 | No text annotation | ||
| IL_1Q8N_031 | No text annotation | ||
| IL_1Q8N_034 | No text annotation | ||
| IL_1Q8N_037 | No text annotation | ||
| IL_1Q8N_040 | No text annotation | ||
| IL_1Q8N_043 | No text annotation | ||
| IL_1Q8N_046 | No text annotation | ||
| IL_1Q8N_049 | No text annotation | ||
| IL_1Q8N_052 | No text annotation | ||
| IL_1Q8N_055 | No text annotation | ||
| IL_1Q8N_058 | No text annotation | ||
| IL_1Q8N_061 | No text annotation | ||
| IL_1Q8N_064 | No text annotation | ||
| IL_1Q8N_067 | No text annotation | ||
| IL_1Q8N_070 | No text annotation | ||
| IL_1Q8N_073 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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