4V6I Summary
- Structure Title
- 4V6I Summary
- Authors
- Release Date
- 2014-07-09
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
- Chains
-
- 6 RNA chains from Saccharomyces cerevisiae
- 80 other chains
- Compounds
- 40S ribosomal protein rpS0 (S2p), 40S ribosomal protein rpS3 (S3p), 40S ribosomal protein rpS9 (S4p), 40S ribosomal protein rpS4 (S4e), 40S ribosomal protein rpS2 (S5p), 40S ribosomal protein rpS5 (S7p), 40S ribosomal protein rpS7 (S7e), 40S ribosomal protein rpS22 (S8p), 40S ribosomal protein rpS16 (S9p), 40S ribosomal protein rpS20 (S10p), 40S ribosomal protein rpS14 (S11p), 40S ribosomal protein rpS23 (S12p), 40S ribosomal protein rpS18 (S13p), 40S ribosomal protein rpS29 (S14p), 40S ribosomal protein rpS13 (S15p), 40S ribosomal protein rpS11 (S17p), 40S ribosomal protein rpS17 (S17e), 40S ribosomal protein rpS15 (S19p), 40S ribosomal protein rpS19 (S19e), 40S ribosomal protein rpS21 (S21e), 40S ribosomal protein S24, 40S ribosomal protein rpS25 (S25e), 40S ribosomal protein rpS26 (S26e), 40S ribosomal protein rpS27 (S27e), 40S ribosomal protein rpS28 (S28e), 40S ribosomal protein rpS30 (S30e), 40S ribosomal protein RACK1 (RACK1), Unknown 40S ribosomal protein XS1, Unknown 40S ribosomal protein XS2, 60S ribosomal protein rpL1 (L1p), 60S ribosomal protein rpL2 (L2p), 60S ribosomal protein rpL3 (L3p), 60S ribosomal protein rpL4 (L4p), 60S ribosomal protein rpL11 (L5p), 60S ribosomal protein rpL9 (L6p), 60S ribosomal protein rpL6 (L6e), 60S ribosomal protein rpL8 (L7ae), 60S ribosomal protein rpL10 (L10e), 60S ribosomal protein rpL12 (L11p), 60S ribosomal protein rpL16 (L13p), 60S ribosomal protein rpL13 (L13e), 60S ribosomal protein rpL23 (L14p), 60S ribosomal protein rpL14 (L14e), 60S ribosomal protein rpL28 (L15p), 60S ribosomal protein rpL15 (L15e), 60S ribosomal protein rpL5 (L18p), 60S ribosomal protein rpL18 (L18e), 60S ribosomal protein rpL20 (L18ae), 60S ribosomal protein rpL19 (L19e), 60S ribosomal protein rpL21 (L21e), 60S ribosomal protein rpL17 (L22p), 60S ribosomal protein rpL22 (L22e), 60S ribosomal protein rpL25 (L23p), 60S ribosomal protein rpL26 (L24p), 60S ribosomal protein rpL24 (L24e), 60S ribosomal protein rpL27 (L27e), 60S ribosomal protein rpL35 (L29p), 60S ribosomal protein rpL29 (L29e), 60S ribosomal protein rpL7 (L30p), 60S ribosomal protein rpL30 (L30e), 60S ribosomal protein rpL31 (L31e), 60S ribosomal protein pL32 (L32e), 60S ribosomal protein rpL34 (L34e), 60S ribosomal protein rpL33 (L35ae), 60S ribosomal protein rpL36 (L36e), 60S ribosomal protein rpL37 (L37e), 60S ribosomal protein rpL43 (L37ae), 60S ribosomal protein rpL38 (L38e), 60S ribosomal protein rpL39 (L39e), 60S ribosomal protein rpL40 (L40e), 60S ribosomal protein rpL41 (L41e), 60S ribosomal protein rpL42 (L44e), 60S acidic ribosomal protein rpP0 (L10P), 60S acidic ribosomal protein rpP11 (P1), 60S acidic ribosomal protein rpP11 (P1), 60S acidic ribosomal protein (P2), 60S acidic ribosomal protein (P2), Unknown protein, Unknown protein, Unknown protein, 18S rRNA, P-SITE TRNA ASP, MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3'), 25S rRNA, 5.8S rRNA, 5S rRNA
Pairwise Interactions
Interactions annotated by FR3D:- 1,683 base-pairs
- 4,828 base-stacking
- 2,083 base-phosphate
- 223 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4V6I contains:- 207 internal loops from 0 motif groups
- 112 hairpin loops from 0 motif groups
- 28 three-way junctions
3D Redundancy
4V6I has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_90506.47 (1)
- NR_20.0_03510.42 (1)
- NR_20.0_21264.2 (1)
- NR_20.0_18586.44 (1)
- NR_all_90506.47 (1)
- NR_all_03510.42 (1)
- NR_all_21264.2 (1)
- NR_all_18586.44 (1)
Similar structures
4V88 4U4Y 4U51 6TNU 4U55 6S47 6FAI 4U53 5JUP 4U50 6Z6K 6Z6J 6RBD 4U53 6SV4 4U3N 6T7I 4U6F 7B7D 4U4Y 4U3N 6SV4 6SV4 4U55 6XIR 6T7T 5M1J 4U4Z 4U4N 4U50 4U51 4U56 4U56 4U4O 4V8Y 6GQ1 5LL6 6I7O 6I7O 6ZCE 3J6Y 3J6X 3J77 3J78 6ZU9 4V8Z 4U4O 7NRD 6XIQ 7NRC 5MC6 6T83 6T83 5JUO 5JUT 5JUU 6RBE 6EML 6GQB 6Y7C 5JUS 6GQV 5TBW 5LYB 5ON6 5NDV 5NDV 5NDG 5NDG 5TGM 5TGM 4V7R 4V7R 5DAT 5TGA 5DGE 5NDW 6HHQ 5ON6 4V88 5TBW 7OSA 6HHQ 5OBM 5I4L 5MEI 5NDW 5LYB 5I4L 5MEI 5OBM 7OSM 5DGV 5DGF 4U3U 4U3M 4U4Q 4U4U 4U52 4U3M 4U6F 7RR5 4U4N 4U52 4U4U 4U4Q 6Q8Y 6ZVI 7A1G 4U4R 5DC3 5DAT 5TGA 5DGV 5DGE 5DGF 5DC3 6T4Q 4U4R 6WOO 6TB3 6SNT 4U3U 4U4ZStructures from NR_all_03510.42