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Structure Title
5GAK Summary
Authors
Release Date
2016-02-24
Experimental technique
ELECTRON MICROSCOPY
Resolution
3.9 Å
Chains
  • 5 RNA chains from Saccharomyces cerevisiae
  • 44 other chains
Compounds
25S rRNA, 5S rRNA, 5.8S rRNA, The A-site tRNA was modeled based on an E. coli tRNA-Lys, P-site tRNA, 60S ribosomal protein L42-A, 60S ribosomal protein L43-A, 60S ribosomal protein L2-A, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-B, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L22-A, 60S ribosomal protein L23-A, 60S ribosomal protein L24-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, 60S ribosomal protein L28, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L35-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, 60S ribosomal protein L38, 60S ribosomal protein L39, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L41-A, Eukaryotic translation initiation factor 5A-1, ribosomal protein RPL1, 60S ribosomal protein L10, nascent polypeptide chain

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 5GAK contains:
  • 152 internal loops from 0 motif groups
  • 84 hairpin loops from 0 motif groups
  • 10 three-way junctions
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3D Redundancy

5GAK has chains which belong to the following equivalence classes in the current representative set: