5U4J Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5U4J_001 | 1/A/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
| HL_5U4J_002 | 1/a/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_5U4J_003 | 1/a/521:528 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_5U4J_005 | 1/a/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5U4J_006 | 1/a/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_5U4J_007 | 1/a/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5U4J_004 | No text annotation | ||
| HL_5U4J_008 | tRNA anticodon loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5U4J_001 | 1/a/30:32, 1/a/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_5U4J_003 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_5U4J_004 | 1/a/515:521, 1/a/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_5U4J_005 | 1/a/887:894, 1/a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_5U4J_006 | 1/a/922:923, 1/a/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_5U4J_007 | 1/a/925:927, 1/a/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_5U4J_008 | 1/a/1060:1061, 1/a/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_5U4J_009 | 1/a/1061:1063, 1/a/1193:1195 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_5U4J_010 | 1/a/1399:1401, 1/a/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_5U4J_011 | 1/a/1401:1404, 1/a/1497:1501 | No text annotation Not in a motif group | homologous IL_5J7L_059 NA | |
| IL_5U4J_012 | 1/a/1405:1409, 1/a/1491:1496 | No text annotation Not in a motif group | homologous IL_6CZR_167 NA | |
| IL_5U4J_013 | 1/a/1412:1414, 1/a/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5U4J_014 | 1/a/1416:1419, 1/a/1481:1484 | Double sheared Not in a motif group | homologous IL_6CZR_169 IL_09705.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5U4J_002 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
Coloring options: