5U4J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5U4J_001 | 1/A/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_5U4J_002 | 1/a/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_5U4J_009 | 1/a/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.7 | |
| HL_5U4J_005 | 1/a/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_5U4J_006 | 1/a/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_5U4J_007 | 1/a/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_5U4J_008 | 1/x/32:40 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5U4J_003 | No text annotation | ||
| HL_5U4J_004 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5U4J_001 | 1/a/30:32, 1/a/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_5U4J_003 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_5U4J_004 | 1/a/515:521, 1/a/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_5U4J_005 | 1/a/887:894, 1/a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_5U4J_006 | 1/a/922:923, 1/a/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_5U4J_007 | 1/a/925:927, 1/a/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_5U4J_008 | 1/a/1060:1061, 1/a/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.5 | |
| IL_5U4J_009 | 1/a/1061:1063, 1/a/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_5U4J_010 | 1/a/1399:1401, 1/a/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_5U4J_011 | 1/a/1401:1404, 1/a/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_5U4J_012 | 1/a/1405:1409, 1/a/1491:1496 | Partly complementary | homologous IL_6CZR_167 NA | |
| IL_5U4J_013 | 1/a/1412:1414, 1/a/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_5U4J_014 | 1/a/1416:1419, 1/a/1481:1484 | Double sheared | homologous IL_6CZR_169 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5U4J_002 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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