Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6QNR_0011/13/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_6QNR_0031/13/157:164No text annotation
Not in a motif group
HL_6QNR_0041/13/186F:191ANo text annotation
Not in a motif group
homologous
HL_6CZR_075
HL_61849.1
HL_6QNR_0051/13/200:217No text annotation
Not in a motif group
homologous
HL_6CZR_076
HL_34168.2
HL_6QNR_0061/13/258:268No text annotation
Not in a motif group
geometric
HL_4WSM_226
HL_22031.2
HL_6QNR_0071/13/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_35490.2
HL_6QNR_0081/13/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_6QNR_0101/13/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_35490.2
HL_6QNR_0111/13/419:424No text annotation
Not in a motif group
homologous
HL_6CZR_082
HL_03562.2
HL_6QNR_0121/13/458:474No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_6QNR_0131/13/521:528No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_70546.1
HL_6QNR_0141/13/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.3
HL_6QNR_0151/13/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_6QNR_0161/13/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_6QNR_0171/13/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_6QNR_0181/13/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.2
HL_6QNR_0191/13/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_35490.2
HL_6QNR_0201/13/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_35490.2
HL_6QNR_0211/13/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_6QNR_0221/13/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_35490.2
HL_6QNR_0231/13/1028A:1032BNo text annotation
Not in a motif group
HL_6QNR_0241/13/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_35490.2
HL_6QNR_0251/13/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_6QNR_0261/13/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_6QNR_0271/13/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_35490.2
HL_6QNR_0281/13/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_35490.2
HL_6QNR_0291/13/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_41998.1
HL_6QNR_0301/13/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_6QNR_0311/13/1449:1454No text annotation
Not in a motif group
homologous
HL_6CZR_102
HL_49722.1
HL_6QNR_0321/13/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_6QNR_0331/14/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.2
HL_6QNR_0341/14/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_6QNR_0351/14/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_70546.1
HL_6QNR_0361/14/137A:141ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.3
HL_6QNR_0381/14/194:201No text annotation
Not in a motif group
geometric
HL_4V9F_006
HL_06192.2
HL_6QNR_0391/14/225:230No text annotation
Not in a motif group
homologous
HL_7A0S_007
HL_02862.2
HL_6QNR_0401/14/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_6QNR_0411/14/270J:270PNo text annotation
Not in a motif group
HL_6QNR_0421/14/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_41998.1
HL_6QNR_0431/14/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_70546.1
HL_6QNR_0441/14/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.9
HL_6QNR_0451/14/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_6QNR_0461/14/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_6QNR_0471/14/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_35490.2
HL_6QNR_0481/14/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_35490.2
HL_6QNR_0491/14/544:549No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_6QNR_0501/14/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_41998.1
HL_6QNR_0511/14/611:617No text annotation
Not in a motif group
homologous
HL_7A0S_019
HL_32369.1
HL_6QNR_0521/14/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_35490.2
HL_6QNR_0531/14/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_35490.2
HL_6QNR_0541/14/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_6QNR_0551/14/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_6QNR_0561/14/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_56241.1
HL_6QNR_0571/14/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_53619.1
HL_6QNR_0591/14/955:962GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_35490.2
HL_6QNR_0601/14/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_6QNR_0611/14/1170:1179No text annotation
Not in a motif group
HL_6QNR_0621/14/1223:1228No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_35490.2
HL_6QNR_0631/14/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_41998.1
HL_6QNR_0641/14/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_6QNR_0651/14/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_6QNR_0661/14/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_6QNR_0671/14/1451:1459No text annotation
Not in a motif group
homologous
HL_7RQB_037
HL_32426.1
HL_6QNR_0681/14/1491:1499No text annotation
Not in a motif group
geometric
HL_2A43_001
HL_26881.3
HL_6QNR_0691/14/1532:1539No text annotation
Not in a motif group
HL_6QNR_0701/14/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.5
HL_6QNR_0711/14/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_6QNR_0721/14/1630A:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.2
HL_6QNR_0731/14/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_6QNR_0741/14/1727:1733No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_6QNR_0751/14/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.5
HL_6QNR_0761/14/1777:1787No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_6QNR_0771/14/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_35490.2
HL_6QNR_0781/14/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_35490.2
HL_6QNR_0791/14/1909:1921No text annotation
Not in a motif group
homologous
HL_7RQB_048
NA
HL_6QNR_0801/14/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_6QNR_0811/14/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_6QNR_0821/14/2142:2149No text annotation
Not in a motif group
HL_6QNR_0831/14/2209:2215No text annotation
Not in a motif group
homologous
HL_7RQB_052
HL_98426.1
HL_6QNR_0841/14/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_6QNR_0851/14/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_6QNR_0861/14/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_6QNR_0871/14/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.4
HL_6QNR_0881/14/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_53619.1
HL_6QNR_0891/14/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_35490.2
HL_6QNR_0901/14/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_40210.2
HL_6QNR_0921/14/2527:2536tRNA anticodon loop
Not in a motif group
geometric
HL_3W3S_002
HL_71170.1
HL_6QNR_0931/14/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_6QNR_0941/14/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_35490.2
HL_6QNR_0951/14/2658:2663GNRA
Not in a motif group
geometric
HL_4QLM_001
HL_40210.2
HL_6QNR_0961/14/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_6QNR_0971/14/2745:2759No text annotation
Not in a motif group
homologous
HL_7A0S_065
HL_56677.7
HL_6QNR_0991/14/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_64690.1
HL_6QNR_1001/14/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_35490.2
HL_6QNR_1011/16/38:44No text annotation
Not in a motif group
geometric
HL_7RQB_070
HL_87939.2
HL_6QNR_1021/16/86:90GNRA
Not in a motif group
homologous
HL_4V9F_072
HL_35490.2
HL_6QNR_1031/1G/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_6QNR_1051/1G/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_35490.2
HL_6QNR_1061/1G/186F:191ANo text annotation
Not in a motif group
homologous
HL_6CZR_075
HL_61849.1
HL_6QNR_1071/1G/200:217No text annotation
Not in a motif group
homologous
HL_6CZR_076
HL_34168.2
HL_6QNR_1081/1G/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_6QNR_1091/1G/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_35490.2
HL_6QNR_1101/1G/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_6QNR_1111/1G/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_6QNR_1121/1G/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_35490.2
HL_6QNR_1131/1G/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_6QNR_1141/1G/457:475No text annotation
Not in a motif group
geometric
HL_3RG5_006
HL_71170.1
HL_6QNR_1151/1G/521:528No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_52841.1
HL_6QNR_1161/1G/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.3
HL_6QNR_1171/1G/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_6QNR_1181/1G/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_6QNR_1191/1G/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_6QNR_1201/1G/838:848No text annotation
Not in a motif group
HL_6QNR_1211/1G/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_35490.2
HL_6QNR_1221/1G/897:902GNRA
Not in a motif group
homologous
HL_5J7L_020
HL_35490.2
HL_6QNR_1231/1G/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_6QNR_1241/1G/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_35490.2
HL_6QNR_1261/1G/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_35490.2
HL_6QNR_1271/1G/1089:1096No text annotation
Not in a motif group
homologous
HL_5J7L_024
HL_71554.2
HL_6QNR_1281/1G/1133:1141No text annotation
Not in a motif group
geometric
HL_5TBW_021
HL_33817.1
HL_6QNR_1291/1G/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_35490.2
HL_6QNR_1301/1G/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_35490.2
HL_6QNR_1311/1G/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_41998.1
HL_6QNR_1321/1G/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_6QNR_1331/1G/1449:1454No text annotation
Not in a motif group
geometric
HL_4TUW_002
HL_28980.2
HL_6QNR_1341/1G/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_6QNR_1351/1H/58:67No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.2
HL_6QNR_1361/1H/86:94No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_6QNR_1371/1H/121:126No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_70546.1
HL_6QNR_1381/1H/136:141No text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.3
HL_6QNR_1391/1H/154:162No text annotation
Not in a motif group
HL_6QNR_1401/1H/184:191No text annotation
Not in a motif group
homologous
HL_7RQB_006
HL_06192.2
HL_6QNR_1411/1H/215:220No text annotation
Not in a motif group
homologous
HL_7A0S_007
HL_02862.2
HL_6QNR_1421/1H/236:242No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_6QNR_1431/1H/270:276No text annotation
Not in a motif group
geometric
HL_4WRT_001
HL_56241.1
HL_6QNR_1441/1H/330:337No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_41998.1
HL_6QNR_1451/1H/344:348No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_70546.1
HL_6QNR_1461/1H/352:360No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.9
HL_6QNR_1471/1H/410:420No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_6QNR_1481/1H/438:445No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_6QNR_1491/1H/489:494No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_35490.2
HL_6QNR_1501/1H/514:519No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_35490.2
HL_6QNR_1511/1H/569:574GNRA
Not in a motif group
geometric
HL_3V7E_003
HL_35490.2
HL_6QNR_1521/1H/590:599No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_41998.1
HL_6QNR_1531/1H/636:642No text annotation
Not in a motif group
homologous
HL_7A0S_019
HL_32369.1
HL_6QNR_1541/1H/655:660No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_35490.2
HL_6QNR_1551/1H/667:673No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_35490.2
HL_6QNR_1571/1H/760:767No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_6QNR_1581/1H/792:801No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_6QNR_1591/1H/827:833No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_56241.1
HL_6QNR_1601/1H/874:879No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_53619.1
HL_6QNR_1621/1H/1001:1008No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_35490.2
HL_6QNR_1631/1H/1025:1032No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_6QNR_1651/1H/1217:1225No text annotation
Not in a motif group
geometric
HL_5J7L_018
HL_34168.2
HL_6QNR_1661/1H/1269:1274No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_35490.2
HL_6QNR_1671/1H/1328:1336No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_41998.1
HL_6QNR_1681/1H/1371:1377No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_6QNR_1691/1H/1410:1415No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_6QNR_1701/1H/1436:1445No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_6QNR_1711/1H/1500:1507No text annotation
Not in a motif group
homologous
HL_7RQB_037
HL_32426.1
HL_6QNR_1721/1H/1539:1545No text annotation
Not in a motif group
homologous
HL_7RQB_038
HL_46680.1
HL_6QNR_1741/1H/1613:1616No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.5
HL_6QNR_1751/1H/1659:1666No text annotation
Not in a motif group
homologous
HL_7A0S_040
HL_64430.2
HL_6QNR_1761/1H/1678:1683No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.2
HL_6QNR_1771/1H/1739:1744UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_6QNR_1781/1H/1766:1772No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_6QNR_1791/1H/1784:1788No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.5
HL_6QNR_1801/1H/1809:1819No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_6QNR_1811/1H/1838:1843No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_35490.2
HL_6QNR_1821/1H/1896:1901No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_35490.2
HL_6QNR_1831/1H/1932:1944No text annotation
Not in a motif group
homologous
HL_7RQB_048
NA
HL_6QNR_1841/1H/1972:1980No text annotation
Not in a motif group
homologous
HL_7A0S_048
HL_51824.1
HL_6QNR_1851/1H/2050:2059No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_6QNR_1861/1H/2166:2171UNCG
Not in a motif group
homologous
HL_3U4M_001
HL_03562.2
HL_6QNR_1871/1H/2227:2232No text annotation
Not in a motif group
homologous
HL_7RQB_052
HL_98426.1
HL_6QNR_1881/1H/2261:2269No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_6QNR_1891/1H/2277:2289No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_6QNR_1901/1H/2316:2326No text annotation
Not in a motif group
homologous
HL_5J7L_188
HL_11805.3
HL_6QNR_1911/1H/2337:2344No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.4
HL_6QNR_1921/1H/2368:2375No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_53619.1
HL_6QNR_1931/1H/2387:2392No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_35490.2
HL_6QNR_1941/1H/2417:2426No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_40210.2
HL_6QNR_1951/1H/2484:2492No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_6QNR_1961/1H/2541:2548No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_91104.1
HL_6QNR_1971/1H/2564:2570No text annotation
Not in a motif group
homologous
HL_7RQB_062
NA
HL_6QNR_1981/1H/2607:2612No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_35490.2
HL_6QNR_1991/1H/2671:2676GNRA
Not in a motif group
geometric
HL_5J7L_197
HL_35490.2
HL_6QNR_2001/1H/2714:2719No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_6QNR_2011/1H/2759:2773No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_6QNR_2031/1H/2830:2838No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_64690.1
HL_6QNR_2041/1H/2867:2872No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_35490.2
HL_6QNR_2051/1J/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.2
HL_6QNR_2061/1J/86:90No text annotation
Not in a motif group
HL_6QNR_2081/1K/30:40No text annotation
Not in a motif group
homologous
HL_1B23_002
NA
HL_6QNR_2091/1K/53:61No text annotation
Not in a motif group
homologous
HL_1H4S_003
NA
HL_6QNR_2101/1L/12:24No text annotation
Not in a motif group
HL_6QNR_2111/1L/30:40No text annotation
Not in a motif group
homologous
HL_1B23_002
NA
HL_6QNR_2121/1L/53:61No text annotation
Not in a motif group
homologous
HL_6CFJ_108
NA
HL_6QNR_2131/2K/13:22No text annotation
Not in a motif group
homologous
HL_6PMO_003
NA
HL_6QNR_2141/2K/30:40No text annotation
Not in a motif group
homologous
HL_5EL4_222
NA
HL_6QNR_2151/2K/53:61No text annotation
Not in a motif group
homologous
HL_6CFJ_108
NA
HL_6QNR_2161/2L/13:22No text annotation
Not in a motif group
homologous
HL_6PMO_003
NA
HL_6QNR_2171/2L/30:40No text annotation
Not in a motif group
homologous
HL_5EL4_222
NA
HL_6QNR_2181/2L/53:61No text annotation
Not in a motif group
homologous
HL_6CFJ_108
NA
HL_6QNR_2191/3K/12:23No text annotation
Not in a motif group
HL_6QNR_2211/3K/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4LCK_003
HL_41998.1
HL_6QNR_2221/3L/13:22No text annotation
Not in a motif group
homologous
HL_5E81_219
NA
HL_6QNR_2231/3L/29:41No text annotation
Not in a motif group
homologous
HL_6GSL_221
HL_06285.3
HL_6QNR_2241/3L/49:65No text annotation
Not in a motif group
homologous
HL_5E81_221
NA
HL_6QNR_2251/5K/13:22No text annotation
Not in a motif group
homologous
HL_3KFU_004
NA
HL_6QNR_2261/5K/30:40No text annotation
Not in a motif group
homologous
HL_1B23_002
NA
HL_6QNR_2271/5K/53:61No text annotation
Not in a motif group
homologous
HL_1FIR_003
NA

Problematic loops

#loop idProblemSequence
HL_6QNR_002No text annotation
HL_6QNR_009No text annotation
HL_6QNR_037No text annotation
HL_6QNR_058No text annotation
HL_6QNR_091No text annotation
HL_6QNR_098No text annotation
HL_6QNR_104No text annotation
HL_6QNR_125No text annotation
HL_6QNR_156No text annotation
HL_6QNR_161No text annotation
HL_6QNR_164No text annotation
HL_6QNR_173No text annotation
HL_6QNR_202No text annotation
HL_6QNR_207No text annotation
HL_6QNR_220No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6QNR_0011/13/30:32,
1/13/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.3
IL_6QNR_0021/13/44:45,
1/13/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.6
IL_6QNR_0031/13/47:52,
1/13/359:361
No text annotation
Not in a motif group
homologous
IL_4LFB_003
IL_14177.1
IL_6QNR_0041/13/54:56,
1/13/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_80097.1
IL_6QNR_0051/13/63:66,
1/13/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_6QNR_0061/13/67:69,
1/13/99:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_86319.2
IL_6QNR_0071/13/129:131,
1/13/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_6QNR_0081/13/132:136,
1/13/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_6QNR_0091/13/147:153,
1/13/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_6QNR_0101/13/185:186B,
1/13/191E:192
No text annotation
Not in a motif group
IL_6QNR_0111/13/242:247,
1/13/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_6QNR_0121/13/249:252,
1/13/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_6QNR_0131/13/292:293,
1/13/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_6QNR_0141/13/367:369,
1/13/392:393
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.16
IL_6QNR_0151/13/371:375,
1/13/389:390
C-loop
Not in a motif group
geometric
IL_4LFB_015
IL_75255.1
IL_6QNR_0161/13/375:376,
1/13/387:389
Single bulged G
Not in a motif group
homologous
IL_4LFB_016
IL_00225.3
IL_6QNR_0171/13/409:416,
1/13/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_6QNR_0181/13/446:450,
1/13/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4LFB_018
IL_88269.3
IL_6QNR_0191/13/450:455,
1/13/477:483
No text annotation
Not in a motif group
homologous
IL_4LFB_019
IL_11882.1
IL_6QNR_0201/13/504:511,
1/13/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_6QNR_0211/13/515:521,
1/13/528:536
No text annotation
Not in a motif group
homologous
IL_4LFB_021
NA
IL_6QNR_0221/13/569:575,
1/13/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_6QNR_0231/13/580:584,
1/13/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_6QNR_0241/13/594:596,
1/13/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.3
IL_6QNR_0251/13/597:598,
1/13/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.8
IL_6QNR_0261/13/605:612,
1/13/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_6QNR_0271/13/654:655,
1/13/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_6QNR_0281/13/657:658,
1/13/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.3
IL_6QNR_0291/13/662:666,
1/13/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_6QNR_0301/13/673:678,
1/13/712:717
No text annotation
Not in a motif group
geometric
IL_5J7L_034
IL_04668.2
IL_6QNR_0311/13/683:688,
1/13/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_6QNR_0321/13/774:778,
1/13/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_6QNR_0331/13/779:783,
1/13/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_6QNR_0341/13/887:894,
1/13/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_6QNR_0351/13/922:923,
1/13/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.6
IL_6QNR_0361/13/925:927,
1/13/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.3
IL_6QNR_0371/13/933:936,
1/13/1379:1384
No text annotation
Not in a motif group
geometric
IL_6CZR_149
IL_93211.1
IL_6QNR_0381/13/953:954,
1/13/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.4
IL_6QNR_0391/13/993:998A,
1/13/1042:1045
No text annotation
Not in a motif group
IL_6QNR_0401/13/1048:1050,
1/13/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.16
IL_6QNR_0411/13/1050:1052,
1/13/1206:1208
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_70707.2
IL_6QNR_0421/13/1052:1056,
1/13/1204:1206
Isolated cWS basepair
Not in a motif group
geometric
IL_4LFB_044
IL_76319.2
IL_6QNR_0431/13/1057:1058,
1/13/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_80097.1
IL_6QNR_0441/13/1060:1061,
1/13/1195:1197
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.16
IL_6QNR_0451/13/1061:1063,
1/13/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_86319.2
IL_6QNR_0461/13/1124:1128,
1/13/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_6QNR_0471/13/1129:1132,
1/13/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_6QNR_0481/13/1158:1161,
1/13/1175:1181
No text annotation
Not in a motif group
geometric
IL_4LFB_050
IL_42032.1
IL_6QNR_0491/13/1247:1253,
1/13/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_6QNR_0501/13/1255:1258,
1/13/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_6QNR_0511/13/1259:1260,
1/13/1274:1276
Not an internal loop
Not in a motif group
geometric
IL_4LFB_053
IL_80097.1
IL_6QNR_0521/13/1260:1262,
1/13/1273:1274
Minor groove platform
Not in a motif group
homologous
IL_4LFB_054
IL_80097.1
IL_6QNR_0531/13/1303:1308,
1/13/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_6QNR_0541/13/1399:1401,
1/13/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_6QNR_0551/13/1401:1405,
1/13/1496:1501
No text annotation
Not in a motif group
homologous
IL_4LFB_057
NA
IL_6QNR_0561/13/1405:1409,
1/13/1491:1496
No text annotation
Not in a motif group
homologous
IL_4LFB_058
NA
IL_6QNR_0571/13/1412:1414,
1/13/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_86319.2
IL_6QNR_0581/13/1416:1419,
1/13/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.10
IL_6QNR_0591/13/1431:1435,
1/13/1466:1469
UAA/GAN variation
Not in a motif group
geometric
IL_4LFB_062
IL_07235.1
IL_6QNR_0601/13/1435:1437,
1/13/1464:1466
No text annotation
Not in a motif group
homologous
IL_4LFB_063
IL_86319.2
IL_6QNR_0611/13/1440:1447,
1/13/1459:1461
No text annotation
Not in a motif group
homologous
IL_4LFB_064
IL_92788.2
IL_6QNR_0621/14/24:30,
1/14/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_6QNR_0631/14/36:37,
1/14/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.6
IL_6QNR_0641/14/43:45,
1/14/433:436
Major groove platform with extra cWW
Not in a motif group
geometric
IL_4V9F_003
IL_18471.2
IL_6QNR_0651/14/81:85,
1/14/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_6QNR_0661/14/183:184,
1/14/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.4
IL_6QNR_0671/14/188:194,
1/14/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_006
IL_04346.7
IL_6QNR_0681/14/239:245,
1/14/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_6QNR_0691/14/271:272,
1/14/365:366
No text annotation
Not in a motif group
IL_6QNR_0701/14/273:273A,
1/14/363E:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.3
IL_6QNR_0711/14/273F:279,
1/14/361:363
No text annotation
Not in a motif group
IL_6QNR_0721/14/280:284,
1/14/357:360
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_6QNR_0731/14/288:290,
1/14/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_6QNR_0741/14/293:295,
1/14/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_6QNR_0751/14/481:484,
1/14/496:509
No text annotation
Not in a motif group
geometric
IL_7RQB_014
IL_60992.6
IL_6QNR_0761/14/564:566,
1/14/575:577
No text annotation
Not in a motif group
homologous
IL_7RQB_015
IL_86319.2
IL_6QNR_0771/14/606:609A,
1/14/618A:622
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_6QNR_0781/14/672:674,
1/14/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_86319.2
IL_6QNR_0791/14/674:678,
1/14/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_4WF9_021
IL_17470.6
IL_6QNR_0801/14/697:698,
1/14/763:765
Single bulged A
Not in a motif group
homologous
IL_7RQB_019
IL_37497.6
IL_6QNR_0811/14/702:703,
1/14/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.3
IL_6QNR_0821/14/703:707,
1/14/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_6QNR_0831/14/738:741,
1/14/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_6QNR_0841/14/775:777,
1/14/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_6QNR_0851/14/837:838,
1/14/940:942
Single stack bend
Not in a motif group
homologous
IL_7RQB_024
IL_92001.1
IL_6QNR_0861/14/844:846,
1/14/931:934
Intercalated cWW
Not in a motif group
homologous
IL_7RQB_025
IL_52767.4
IL_6QNR_0871/14/846:850,
1/14/928:931
No text annotation
Not in a motif group
geometric
IL_7RQB_026
IL_94165.1
IL_6QNR_0881/14/857:862,
1/14/915:920
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_7A0S_027
IL_81631.1
IL_6QNR_0891/14/862:863,
1/14/913:915
Minor groove platform
Not in a motif group
geometric
IL_4V9F_034
IL_42622.4
IL_6QNR_0901/14/864:868,
1/14/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_6QNR_0931/14/952:954,
1/14/963:965
No text annotation
Not in a motif group
homologous
IL_7RQB_034
IL_86319.2
IL_6QNR_0941/14/994:996,
1/14/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_6QNR_0951/14/998:1002,
1/14/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_6QNR_0961/14/1004:1013,
1/14/1149:1151
No text annotation
Not in a motif group
IL_6QNR_0971/14/1018:1024,
1/14/1140:1144
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_6QNR_0981/14/1024:1030,
1/14/1124:1140
No text annotation
Not in a motif group
geometric
IL_7RQB_040
IL_50715.1
IL_6QNR_0991/14/1031:1034,
1/14/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_43275.1
IL_6QNR_1021/14/1196:1198,
1/14/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_045
IL_52767.4
IL_6QNR_1031/14/1202:1206,
1/14/1240:1243
No text annotation
Not in a motif group
homologous
IL_7RQB_046
IL_68574.2
IL_6QNR_1041/14/1208:1215,
1/14/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_6QNR_1051/14/1219:1221,
1/14/1229A:1230
Single bulged A
Not in a motif group
homologous
IL_7RQB_048
IL_37497.6
IL_6QNR_1061/14/1262:1269,
1/14/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_6QNR_1071/14/1310:1313,
1/14/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_6QNR_1081/14/1319:1323,
1/14/1331:1333
C-loop
Not in a motif group
homologous
IL_7RQB_051
IL_63596.6
IL_6QNR_1091/14/1351:1355,
1/14/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7RQB_052
IL_89002.2
IL_6QNR_1101/14/1357:1361,
1/14/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_7RQB_053
IL_17136.1
IL_6QNR_1111/14/1415:1416,
1/14/1582:1587
No text annotation
Not in a motif group
geometric
IL_7RQB_054
IL_67474.4
IL_6QNR_1121/14/1416:1421,
1/14/1577:1582
No text annotation
Not in a motif group
IL_6QNR_1131/14/1433:1435,
1/14/1557:1560
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_056
IL_54997.7
IL_6QNR_1141/14/1437:1440,
1/14/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_6QNR_1151/14/1448:1449A,
1/14/1462:1463
Single stack bend
Not in a motif group
homologous
IL_7RQB_058
IL_76488.4
IL_6QNR_1161/14/1450:1451,
1/14/1459:1461
Single bulged A
Not in a motif group
geometric
IL_7RQB_059
IL_37497.6
IL_6QNR_1171/14/1469:1473,
1/14/1520:1523
UAA/GAN
Not in a motif group
homologous
IL_7RQB_060
IL_07235.1
IL_6QNR_1181/14/1482:1483,
1/14/1506:1512
No text annotation
Not in a motif group
homologous
IL_7RQB_061
IL_52493.1
IL_6QNR_1191/14/1489:1491,
1/14/1499:1500
Single bulged A
Not in a motif group
geometric
IL_7RQB_062
IL_37497.6
IL_6QNR_1201/14/1526:1530,
1/14/1541:1546
No text annotation
Not in a motif group
homologous
IL_7RQB_063
IL_02656.1
IL_6QNR_1211/14/1651:1656,
1/14/2004:2006
No text annotation
Not in a motif group
homologous
IL_7RQB_064
IL_12566.2
IL_6QNR_1221/14/1663:1665,
1/14/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_065
IL_54997.7
IL_6QNR_1231/14/1666:1669,
1/14/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_6QNR_1241/14/1669:1674,
1/14/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_7RQB_067
IL_76273.1
IL_6QNR_1251/14/1686:1691,
1/14/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_65969.2
IL_6QNR_1261/14/1770:1771,
1/14/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.6
IL_6QNR_1271/14/1798:1804,
1/14/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_6QNR_1281/14/1837:1840,
1/14/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7RQB_071
IL_88739.3
IL_6QNR_1291/14/1841:1842,
1/14/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_6QNR_1301/14/1846:1849,
1/14/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.3
IL_6QNR_1311/14/1851:1855,
1/14/1887:1891
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7RQB_074
IL_90318.1
IL_6QNR_1321/14/1856:1861,
1/14/1881:1886
No text annotation
Not in a motif group
geometric
IL_5TBW_026
IL_19954.2
IL_6QNR_1331/14/1933:1934,
1/14/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_318
IL_59677.2
IL_6QNR_1341/14/1934:1945,
1/14/1961:1964
No text annotation
Not in a motif group
homologous
IL_7RQB_077
NA
IL_6QNR_1351/14/2050:2052,
1/14/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.3
IL_6QNR_1361/14/2054:2057,
1/14/2611:2615
No text annotation
Not in a motif group
IL_6QNR_1371/14/2067:2069,
1/14/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.16
IL_6QNR_1381/14/2070:2071,
1/14/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_5J7L_324
IL_42622.4
IL_6QNR_1391/14/2081:2083,
1/14/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_6QNR_1401/14/2085:2087,
1/14/2232:2234
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_86319.2
IL_6QNR_1411/14/2107:2110,
1/14/2179:2182
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1JID_002
IL_30621.4
IL_6QNR_1431/14/2124:2129,
1/14/2160:2174
No text annotation
Not in a motif group
IL_6QNR_1441/14/2129:2142,
1/14/2149:2160
No text annotation
Not in a motif group
IL_6QNR_1451/14/2297:2299,
1/14/2317:2321
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_7RQB_088
IL_38958.7
IL_6QNR_1461/14/2350:2353,
1/14/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.10
IL_6QNR_1471/14/2401:2403,
1/14/2414:2415
No text annotation
Not in a motif group
IL_6QNR_1481/14/2453:2454,
1/14/2498:2500
Single stack bend
Not in a motif group
geometric
IL_7RQB_091
IL_76488.4
IL_6QNR_1491/14/2454:2455,
1/14/2496:2498
Major groove platform
Not in a motif group
homologous
IL_7RQB_092
IL_27635.3
IL_6QNR_1501/14/2457:2459,
1/14/2493:2494
Major groove platform
Not in a motif group
homologous
IL_4WF9_091
IL_27635.3
IL_6QNR_1511/14/2459:2461,
1/14/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_7RQB_094
IL_92788.2
IL_6QNR_1521/14/2466:2470,
1/14/2480:2484
Triple sheared
Not in a motif group
homologous
IL_4WF9_093
IL_56467.8
IL_6QNR_1531/14/2507:2508,
1/14/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_6QNR_1541/14/2510:2512,
1/14/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_097
IL_90933.2
IL_6QNR_1551/14/2512:2513,
1/14/2571:2574
No text annotation
Not in a motif group
geometric
IL_4WF9_096
IL_71530.2
IL_6QNR_1561/14/2522:2523,
1/14/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7RQB_099
IL_95601.3
IL_6QNR_1571/14/2588:2590,
1/14/2604:2606
No text annotation
Not in a motif group
homologous
IL_7RQB_100
NA
IL_6QNR_1581/14/2591:2592,
1/14/2601:2603
Single bulged A
Not in a motif group
homologous
IL_5J7L_344
IL_37497.6
IL_6QNR_1591/14/2636:2640,
1/14/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_04638.1
IL_6QNR_1601/14/2651:2658,
1/14/2663:2669
No text annotation
Not in a motif group
IL_6QNR_1611/14/2680:2684,
1/14/2725:2727
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_6QNR_1621/14/2687:2691,
1/14/2718:2722
No text annotation
Not in a motif group
IL_6QNR_1631/14/2695:2696,
1/14/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_106
IL_71530.2
IL_6QNR_1641/14/2737:2742,
1/14/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7RQB_107
IL_49767.5
IL_6QNR_1651/14/2838:2839,
1/14/2878:2880
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_6QNR_1661/14/2843:2846,
1/14/2870:2874
No text annotation
Not in a motif group
homologous
IL_7RQB_109
IL_58764.3
IL_6QNR_1671/14/2847:2852,
1/14/2865:2869
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.5
IL_6QNR_1681/16/1:2,
1/16/118:119
No text annotation
Not in a motif group
IL_6QNR_1691/16/17:18,
1/16/65:67
Major groove intercalation
Not in a motif group
homologous
IL_7RQB_111
IL_37497.6
IL_6QNR_1701/16/23:28,
1/16/56:60
No text annotation
Not in a motif group
homologous
IL_7RQB_112
NA
IL_6QNR_1711/16/30:32,
1/16/50:54
No text annotation
Not in a motif group
homologous
IL_4WF9_114
IL_10810.1
IL_6QNR_1721/16/34:38,
1/16/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_7RQB_114
IL_58103.6
IL_6QNR_1731/16/71:79,
1/16/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_6QNR_1741/1G/30:32,
1/1G/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.3
IL_6QNR_1751/1G/44:45,
1/1G/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.6
IL_6QNR_1761/1G/47:52,
1/1G/359:361
No text annotation
Not in a motif group
homologous
IL_4LFB_003
IL_14177.1
IL_6QNR_1771/1G/54:56,
1/1G/356:357
Minor groove platform
Not in a motif group
homologous
IL_6CZR_116
IL_80097.1
IL_6QNR_1781/1G/63:66,
1/1G/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_6QNR_1791/1G/67:69,
1/1G/99:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_86319.2
IL_6QNR_1801/1G/128:131,
1/1G/231:233
No text annotation
Not in a motif group
IL_6QNR_1811/1G/132:136,
1/1G/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_6QNR_1821/1G/148:153,
1/1G/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_6QNR_1831/1G/185:186B,
1/1G/191E:192
No text annotation
Not in a motif group
IL_6QNR_1841/1G/242:247,
1/1G/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_6QNR_1851/1G/249:252,
1/1G/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_6QNR_1861/1G/292:293,
1/1G/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_6QNR_1871/1G/367:369,
1/1G/392:393
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.16
IL_6QNR_1881/1G/371:375,
1/1G/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_6QNR_1891/1G/375:376,
1/1G/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.3
IL_6QNR_1901/1G/409:416,
1/1G/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_6QNR_1911/1G/446:450,
1/1G/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4LFB_018
IL_88269.3
IL_6QNR_1921/1G/450:455,
1/1G/477:483
No text annotation
Not in a motif group
homologous
IL_4LFB_019
IL_11882.1
IL_6QNR_1931/1G/504:511,
1/1G/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_6QNR_1941/1G/515:521,
1/1G/528:536
No text annotation
Not in a motif group
homologous
IL_4LFB_021
NA
IL_6QNR_1951/1G/569:575,
1/1G/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_6QNR_1961/1G/580:584,
1/1G/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_6QNR_1971/1G/594:596,
1/1G/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.3
IL_6QNR_1981/1G/597:598,
1/1G/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.8
IL_6QNR_1991/1G/605:612,
1/1G/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_6QNR_2001/1G/654:655,
1/1G/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_6QNR_2011/1G/657:658,
1/1G/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.3
IL_6QNR_2021/1G/662:666,
1/1G/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_6QNR_2031/1G/673:678,
1/1G/712:717
No text annotation
Not in a motif group
homologous
IL_5J7L_034
IL_04668.2
IL_6QNR_2041/1G/683:688,
1/1G/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_6QNR_2051/1G/774:778,
1/1G/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_6QNR_2061/1G/779:783,
1/1G/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_6QNR_2071/1G/887:894,
1/1G/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_6QNR_2081/1G/922:923,
1/1G/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.6
IL_6QNR_2091/1G/925:927,
1/1G/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.3
IL_6QNR_2101/1G/933:935,
1/1G/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_6QNR_2111/1G/953:954,
1/1G/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.4
IL_6QNR_2121/1G/993:997,
1/1G/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_4LFB_039
IL_47078.1
IL_6QNR_2131/1G/1048:1050,
1/1G/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.16
IL_6QNR_2141/1G/1050:1052,
1/1G/1206:1208
Stack and bulge
Not in a motif group
geometric
IL_2O3X_001
IL_64417.2
IL_6QNR_2151/1G/1052:1057,
1/1G/1203:1206
No text annotation
Not in a motif group
IL_6QNR_2161/1G/1057:1058,
1/1G/1199:1203
Minor groove platform
Not in a motif group
geometric
IL_5J7L_048
IL_80097.1
IL_6QNR_2171/1G/1060:1061,
1/1G/1195:1197
Single bulged U
Not in a motif group
geometric
IL_4LFB_046
IL_83039.16
IL_6QNR_2181/1G/1061:1063,
1/1G/1193:1195
No text annotation
Not in a motif group
homologous
IL_4LFB_047
IL_86319.2
IL_6QNR_2191/1G/1124:1129,
1/1G/1143:1149
No text annotation
Not in a motif group
homologous
IL_4LFB_048
IL_85222.1
IL_6QNR_2201/1G/1129:1132,
1/1G/1142:1143
Minor groove platform
Not in a motif group
geometric
IL_5J7L_052
IL_15052.1
IL_6QNR_2211/1G/1247:1253,
1/1G/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_6QNR_2221/1G/1255:1258,
1/1G/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_6QNR_2231/1G/1259:1263,
1/1G/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_6QNR_2241/1G/1303:1308,
1/1G/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_6QNR_2251/1G/1399:1401,
1/1G/1501:1504
No text annotation
Not in a motif group
homologous
IL_4LFB_056
NA
IL_6QNR_2261/1G/1401:1405,
1/1G/1496:1501
No text annotation
Not in a motif group
homologous
IL_4LFB_057
NA
IL_6QNR_2271/1G/1405:1409,
1/1G/1491:1496
No text annotation
Not in a motif group
IL_6QNR_2281/1G/1412:1414,
1/1G/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_86319.2
IL_6QNR_2291/1G/1416:1419,
1/1G/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.10
IL_6QNR_2301/1G/1431:1435,
1/1G/1466:1469
UAA/GAN variation
Not in a motif group
geometric
IL_4LFB_062
IL_07235.1
IL_6QNR_2311/1G/1435:1437,
1/1G/1464:1466
No text annotation
Not in a motif group
homologous
IL_4LFB_063
IL_86319.2
IL_6QNR_2321/1G/1440:1447,
1/1G/1459:1461
No text annotation
Not in a motif group
homologous
IL_4LFB_064
IL_92788.2
IL_6QNR_2331/1H/24:30,
1/1H/536:542
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7RQB_001
IL_66414.6
IL_6QNR_2341/1H/36:37,
1/1H/469:471
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.6
IL_6QNR_2351/1H/42:43,
1/1H/462:464
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.4
IL_6QNR_2361/1H/80:84,
1/1H/96:103
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_6QNR_2371/1H/173:174,
1/1H/202:204
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.4
IL_6QNR_2381/1H/178:184,
1/1H/191:198
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_6QNR_2391/1H/229:235,
1/1H/243:248
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_6QNR_2401/1H/292:293,
1/1H/393:395
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.3
IL_6QNR_2421/1H/305:309,
1/1H/382:385
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_6QNR_2431/1H/313:315,
1/1H/375:378
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_6QNR_2441/1H/318:320,
1/1H/368:372
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_6QNR_2451/1H/508:511,
1/1H/522:535
No text annotation
Not in a motif group
geometric
IL_7RQB_014
IL_60992.6
IL_6QNR_2461/1H/588:590,
1/1H/599:601
No text annotation
Not in a motif group
homologous
IL_5J7L_257
IL_86319.2
IL_6QNR_2471/1H/630:634,
1/1H/644:648
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_6QNR_2481/1H/720:722,
1/1H/854:856
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_86319.2
IL_6QNR_2491/1H/722:726,
1/1H/847:854
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_4WF9_021
IL_17470.6
IL_6QNR_2501/1H/745:746,
1/1H/811:813
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.6
IL_6QNR_2511/1H/750:751,
1/1H/776:778
Single bulged G
Not in a motif group
geometric
IL_7RQB_020
IL_00225.3
IL_6QNR_2521/1H/751:755,
1/1H/772:776
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_6QNR_2531/1H/786:789,
1/1H/804:806
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_6QNR_2541/1H/823:825,
1/1H/835:839
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_6QNR_2551/1H/885:886,
1/1H/986:988
Single stack bend
Not in a motif group
homologous
IL_7RQB_024
IL_92001.1
IL_6QNR_2561/1H/892:894,
1/1H/977:980
Intercalated cWW
Not in a motif group
geometric
IL_7RQB_025
IL_52767.4
IL_6QNR_2571/1H/894:898,
1/1H/974:977
No text annotation
Not in a motif group
homologous
IL_7RQB_026
IL_94165.1
IL_6QNR_2581/1H/906:910,
1/1H/962:966
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7RQB_027
IL_38862.1
IL_6QNR_2591/1H/910:911,
1/1H/960:962
Minor groove platform
Not in a motif group
homologous
IL_4WF9_032
IL_42622.4
IL_6QNR_2601/1H/912:916,
1/1H/956:959
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_6QNR_2611/1H/923:927,
1/1H/945:949
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_6QNR_2631/1H/998:1000,
1/1H/1009:1011
No text annotation
Not in a motif group
homologous
IL_7RQB_034
IL_86319.2
IL_6QNR_2641/1H/1041:1043,
1/1H/1206:1207
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_6QNR_2651/1H/1045:1049,
1/1H/1200:1204
UAA/GAN
Not in a motif group
homologous
IL_7RQB_036
IL_89002.2
IL_6QNR_2661/1H/1051:1058,
1/1H/1197:1198
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_7RQB_037
IL_15861.7
IL_6QNR_2671/1H/1058:1060,
1/1H/1196:1197
Single bulged U
Not in a motif group
homologous
IL_7RQB_038
IL_83039.16
IL_6QNR_2681/1H/1065:1071,
1/1H/1186:1191
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_6QNR_2701/1H/1078:1081,
1/1H/1168:1170
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_43275.1
IL_6QNR_2711/1H/1090:1099,
1/1H/1154:1159
No text annotation
Not in a motif group
IL_6QNR_2741/1H/1242:1244,
1/1H/1294:1297
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_045
IL_52767.4
IL_6QNR_2751/1H/1248:1252,
1/1H/1287:1290
No text annotation
Not in a motif group
homologous
IL_7RQB_046
IL_68574.2
IL_6QNR_2761/1H/1254:1261,
1/1H/1281:1285
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_6QNR_2771/1H/1265:1267,
1/1H/1276:1277
Single bulged A
Not in a motif group
homologous
IL_7RQB_048
IL_37497.6
IL_6QNR_2781/1H/1309:1316,
1/1H/2034:2040
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_6QNR_2791/1H/1357:1360,
1/1H/1650:1651
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_6QNR_2801/1H/1366:1370,
1/1H/1378:1380
C-loop
Not in a motif group
homologous
IL_7RQB_051
IL_63596.6
IL_6QNR_2811/1H/1398:1402,
1/1H/1423:1427
UAA/GAN
Not in a motif group
homologous
IL_7RQB_052
IL_89002.2
IL_6QNR_2821/1H/1404:1408,
1/1H/1417:1421
tSH-tHW-tHS
Not in a motif group
homologous
IL_7RQB_053
IL_17136.1
IL_6QNR_2831/1H/1462:1463,
1/1H/1630:1634
No text annotation
Not in a motif group
homologous
IL_7RQB_054
IL_67474.4
IL_6QNR_2841/1H/1464:1468,
1/1H/1625:1629
UAA/GAN
Not in a motif group
homologous
IL_7RQB_055
IL_89002.2
IL_6QNR_2851/1H/1480:1482,
1/1H/1605:1608
No text annotation
Not in a motif group
homologous
IL_7A0S_052
IL_73028.1
IL_6QNR_2861/1H/1484:1487,
1/1H/1599:1603
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_6QNR_2871/1H/1496:1498,
1/1H/1510:1511
Single stack bend
Not in a motif group
homologous
IL_7RQB_058
IL_76488.4
IL_6QNR_2881/1H/1499:1500,
1/1H/1507:1509
Single bulged A
Not in a motif group
geometric
IL_7RQB_059
IL_37497.6
IL_6QNR_2891/1H/1517:1521,
1/1H/1567:1570
UAA/GAN
Not in a motif group
homologous
IL_7RQB_060
IL_07235.1
IL_6QNR_2901/1H/1529:1530,
1/1H/1553:1559
No text annotation
Not in a motif group
homologous
IL_7RQB_061
IL_52493.1
IL_6QNR_2911/1H/1536:1538,
1/1H/1546:1547
Single bulged A
Not in a motif group
homologous
IL_7RQB_062
IL_37497.6
IL_6QNR_2921/1H/1573:1577,
1/1H/1588:1594
No text annotation
Not in a motif group
homologous
IL_7RQB_063
IL_02656.1
IL_6QNR_2931/1H/1699:1704,
1/1H/2027:2029
No text annotation
Not in a motif group
homologous
IL_7RQB_064
IL_12566.2
IL_6QNR_2941/1H/1711:1713,
1/1H/2018:2020
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_065
IL_54997.7
IL_6QNR_2951/1H/1714:1717,
1/1H/2016:2017
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_6QNR_2961/1H/1717:1722,
1/1H/2013:2016
Intercalated tWH
Not in a motif group
geometric
IL_7RQB_067
IL_76273.1
IL_6QNR_2971/1H/1734:1739,
1/1H/1744:1750
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_65969.2
IL_6QNR_2981/1H/1802:1803,
1/1H/2003:2005
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.6
IL_6QNR_2991/1H/1830:1836,
1/1H/1845:1853
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_6QNR_3001/1H/1869:1872,
1/1H/1925:1926
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7RQB_071
IL_88739.3
IL_6QNR_3011/1H/1873:1874,
1/1H/1921:1924
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_6QNR_3021/1H/1878:1881,
1/1H/1916:1917
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.3
IL_6QNR_3031/1H/1883:1887,
1/1H/1910:1914
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7RQB_074
IL_90318.1
IL_6QNR_3041/1H/1888:1892,
1/1H/1905:1909
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_6QNR_3051/1H/1956:1957,
1/1H/1987:1990
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_076
IL_59677.2
IL_6QNR_3061/1H/1957:1968,
1/1H/1984:1987
No text annotation
Not in a motif group
homologous
IL_7RQB_077
NA
IL_6QNR_3071/1H/2073:2075,
1/1H/2630:2631
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.3
IL_6QNR_3081/1H/2077:2080,
1/1H/2624:2628
No text annotation
Not in a motif group
IL_6QNR_3091/1H/2090:2092,
1/1H/2455:2456
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.16
IL_6QNR_3101/1H/2093:2094,
1/1H/2451:2454
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.4
IL_6QNR_3111/1H/2104:2106,
1/1H/2249:2252
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_6QNR_3121/1H/2108:2110,
1/1H/2245:2247
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_86319.2
IL_6QNR_3131/1H/2131:2133,
1/1H/2202:2204
No text annotation
Not in a motif group
geometric
IL_3RG5_002
IL_86319.2
IL_6QNR_3141/1H/2133:2143,
1/1H/2201:2202
No text annotation
Not in a motif group
IL_6QNR_3151/1H/2310:2312,
1/1H/2330:2334
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_7RQB_088
IL_38958.7
IL_6QNR_3161/1H/2363:2366,
1/1H/2377:2380
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.10
IL_6QNR_3171/1H/2414:2416,
1/1H/2427:2428
No text annotation
Not in a motif group
IL_6QNR_3181/1H/2466:2467,
1/1H/2511:2513
Single stack bend
Not in a motif group
geometric
IL_7RQB_091
IL_76488.4
IL_6QNR_3191/1H/2467:2468,
1/1H/2509:2511
Major groove platform
Not in a motif group
homologous
IL_7RQB_092
IL_27635.3
IL_6QNR_3201/1H/2470:2472,
1/1H/2506:2507
Major groove platform
Not in a motif group
geometric
IL_4WF9_091
IL_27635.3
IL_6QNR_3211/1H/2472:2474,
1/1H/2502:2506
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_094
IL_92788.2
IL_6QNR_3221/1H/2479:2483,
1/1H/2493:2497
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_6QNR_3231/1H/2520:2521,
1/1H/2593:2595
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_6QNR_3241/1H/2523:2525,
1/1H/2587:2591
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_7RQB_097
IL_90933.2
IL_6QNR_3251/1H/2525:2526,
1/1H/2584:2587
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_71530.2
IL_6QNR_3261/1H/2535:2536,
1/1H/2553:2556
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7RQB_099
IL_95601.3
IL_6QNR_3271/1H/2601:2603,
1/1H/2617:2619
No text annotation
Not in a motif group
homologous
IL_7RQB_100
NA
IL_6QNR_3281/1H/2604:2605,
1/1H/2614:2616
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.6
IL_6QNR_3291/1H/2649:2653,
1/1H/2788:2796
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_04638.1
IL_6QNR_3301/1H/2665:2671,
1/1H/2676:2681
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7RQB_103
IL_16458.1
IL_6QNR_3311/1H/2693:2697,
1/1H/2739:2741
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_6QNR_3321/1H/2700:2704,
1/1H/2732:2736
No text annotation
Not in a motif group
homologous
IL_7RQB_105
IL_08296.3
IL_6QNR_3331/1H/2708:2709,
1/1H/2724:2728
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_106
IL_71530.2
IL_6QNR_3341/1H/2751:2756,
1/1H/2776:2781
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_6QNR_3351/1H/2849:2850,
1/1H/2889:2891
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_6QNR_3361/1H/2854:2857,
1/1H/2881:2885
No text annotation
Not in a motif group
homologous
IL_7RQB_109
IL_58764.3
IL_6QNR_3371/1H/2858:2863,
1/1H/2876:2880
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.5
IL_6QNR_3381/1J/17:18,
1/1J/65:67
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_112
IL_37497.6
IL_6QNR_3391/1J/23:28,
1/1J/56:60
No text annotation
Not in a motif group
homologous
IL_7RQB_112
NA
IL_6QNR_3401/1J/30:32,
1/1J/50:54
No text annotation
Not in a motif group
homologous
IL_4WF9_114
IL_10810.1
IL_6QNR_3411/1J/33:38,
1/1J/44:49
No text annotation
Not in a motif group
geometric
IL_7A0S_105
IL_93630.2
IL_6QNR_3421/1J/71:79,
1/1J/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3

Problematic loops

#loop idProblemSequence
IL_6QNR_091No text annotation
IL_6QNR_092No text annotation
IL_6QNR_100No text annotation
IL_6QNR_101No text annotation
IL_6QNR_142No text annotation
IL_6QNR_241No text annotation
IL_6QNR_262No text annotation
IL_6QNR_269No text annotation
IL_6QNR_272No text annotation
IL_6QNR_273No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6QNR_0011/13/46:47,
1/13/361:367,
1/13/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_6QNR_0021/13/586:588,
1/13/651:654,
1/13/754:755
No text annotation
Not in a motif group
J3_6QNR_0031/13/672:673,
1/13/717:725,
1/13/732:734
No text annotation
Not in a motif group
homologous
J3_6CZR_017
NA
J3_6QNR_0041/13/826:829,
1/13/857:861,
1/13/868:874
No text annotation
Not in a motif group
homologous
J3_4LFB_001
NA
J3_6QNR_0051/13/936:939,
1/13/1344:1350,
1/13/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_6QNR_0061/13/943:946,
1/13/1235:1237,
1/13/1337:1340
No text annotation
Not in a motif group
homologous
J3_4LFB_003
NA
J3_6QNR_0071/13/955:962,
1/13/973:984,
1/13/1221:1225
No text annotation
Not in a motif group
J3_6QNR_0081/13/990:993,
1/13/1045:1047,
1/13/1210:1215
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_6QNR_0091/13/1003:1007,
1/13/1022:1028A,
1/13/1032B:1037
No text annotation
Not in a motif group
J3_6QNR_0101/13/1063:1068,
1/13/1107:1113,
1/13/1187:1193
No text annotation
Not in a motif group
J3_6QNR_0111/13/1073:1074,
1/13/1083:1087,
1/13/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_6QNR_0121/13/1116:1118,
1/13/1155:1158,
1/13/1181:1184
No text annotation
Not in a motif group
homologous
J3_4LFB_008
NA
J3_6QNR_0131/13/1237:1241,
1/13/1296:1303,
1/13/1334:1337
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA
J3_6QNR_0141/14/30:31,
1/14/474:481,
1/14/509:510
No text annotation
Not in a motif group
homologous
J3_7RQB_001
NA
J3_6QNR_0151/14/56:57,
1/14/70:76,
1/14/110:114
No text annotation
Not in a motif group
homologous
J3_7RQB_002
NA
J3_6QNR_0161/14/269:270C,
1/14/270W:271,
1/14/366:370
No text annotation
Not in a motif group
J3_6QNR_0171/14/683:689,
1/14/773:775,
1/14/791:794
No text annotation
Not in a motif group
homologous
J3_7A0S_004
NA
J3_6QNR_0181/14/698:700,
1/14/732:736,
1/14/760:763
No text annotation
Not in a motif group
homologous
J3_7RQB_005
NA
J3_6QNR_0191/14/1298:1303,
1/14/1625:1627,
1/14/1639:1642
No text annotation
Not in a motif group
homologous
J3_7RQB_007
NA
J3_6QNR_0201/14/1306:1309,
1/14/1605:1611,
1/14/1620:1622
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_6QNR_0211/14/1344:1350,
1/14/1381:1385,
1/14/1402:1403
No text annotation
Not in a motif group
homologous
J3_7RQB_009
NA
J3_6QNR_0221/14/2091:2093,
1/14/2196:2205,
1/14/2219:2228
No text annotation
Not in a motif group
homologous
J3_7RQB_010
NA
J3_6QNR_0231/14/2295:2297,
1/14/2321:2323,
1/14/2332:2337
No text annotation
Not in a motif group
homologous
J3_7RQB_011
NA
J3_6QNR_0241/14/2517:2520,
1/14/2545:2547,
1/14/2561:2567
No text annotation
Not in a motif group
homologous
J3_7RQB_012
NA
J3_6QNR_0251/14/2789:2792,
1/14/2804:2811,
1/14/2889:2894
No text annotation
Not in a motif group
J3_6QNR_0261/14/2814:2815,
1/14/2831:2836,
1/14/2882:2886
No text annotation
Not in a motif group
J3_6QNR_0271/16/11:16,
1/16/68:70,
1/16/106:109
No text annotation
Not in a motif group
J3_6QNR_0281/1G/46:47,
1/1G/361:367,
1/1G/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_6QNR_0291/1G/586:588,
1/1G/651:654,
1/1G/754:755
No text annotation
Not in a motif group
J3_6QNR_0301/1G/672:673,
1/1G/717:725,
1/1G/732:734
No text annotation
Not in a motif group
homologous
J3_5J7L_003
NA
J3_6QNR_0311/1G/826:829,
1/1G/857:861,
1/1G/868:874
No text annotation
Not in a motif group
homologous
J3_4LFB_001
NA
J3_6QNR_0321/1G/943:946,
1/1G/1235:1237,
1/1G/1337:1340
No text annotation
Not in a motif group
homologous
J3_5J7L_005
NA
J3_6QNR_0331/1G/955:962,
1/1G/973:985,
1/1G/1220:1225
No text annotation
Not in a motif group
J3_6QNR_0341/1G/990:993,
1/1G/1045:1047,
1/1G/1210:1215
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_6QNR_0351/1G/1000:1006,
1/1G/1023:1028A,
1/1G/1032B:1040
No text annotation
Not in a motif group
J3_6QNR_0361/1G/1063:1068,
1/1G/1107:1113,
1/1G/1187:1193
No text annotation
Not in a motif group
J3_6QNR_0371/1G/1073:1074,
1/1G/1083:1087,
1/1G/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_6QNR_0381/1G/1116:1118,
1/1G/1155:1161,
1/1G/1175:1184
No text annotation
Not in a motif group
J3_6QNR_0391/1G/1237:1241,
1/1G/1296:1303,
1/1G/1334:1337
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA
J3_6QNR_0401/1H/30:31,
1/1H/501:508,
1/1H/535:536
No text annotation
Not in a motif group
homologous
J3_7RQB_001
NA
J3_6QNR_0411/1H/55:56,
1/1H/69:75,
1/1H/108:112
No text annotation
Not in a motif group
homologous
J3_7RQB_002
NA
J3_6QNR_0421/1H/259:263,
1/1H/283:290,
1/1H/397:398
No text annotation
Not in a motif group
homologous
J3_7RQB_003
NA
J3_6QNR_0431/1H/731:737,
1/1H/821:823,
1/1H/839:842
No text annotation
Not in a motif group
homologous
J3_7A0S_004
NA
J3_6QNR_0441/1H/746:748,
1/1H/780:784,
1/1H/808:811
No text annotation
Not in a motif group
homologous
J3_7RQB_005
NA
J3_6QNR_0451/1H/1345:1350,
1/1H/1672:1674,
1/1H/1687:1690
No text annotation
Not in a motif group
homologous
J3_7RQB_007
NA
J3_6QNR_0461/1H/1353:1356,
1/1H/1652:1658,
1/1H/1667:1669
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_6QNR_0471/1H/1391:1397,
1/1H/1428:1432,
1/1H/1449:1450
No text annotation
Not in a motif group
homologous
J3_7RQB_009
NA
J3_6QNR_0481/1H/2114:2116,
1/1H/2219:2223,
1/1H/2236:2241
No text annotation
Not in a motif group
homologous
J3_7RQB_010
NA
J3_6QNR_0491/1H/2308:2310,
1/1H/2334:2336,
1/1H/2345:2350
No text annotation
Not in a motif group
homologous
J3_7RQB_011
NA
J3_6QNR_0501/1H/2530:2533,
1/1H/2558:2560,
1/1H/2574:2580
No text annotation
Not in a motif group
homologous
J3_7RQB_012
NA
J3_6QNR_0511/1H/2825:2826,
1/1H/2842:2847,
1/1H/2893:2897
No text annotation
Not in a motif group
homologous
J3_7RQB_014
NA
J3_6QNR_0521/1J/11:16,
1/1J/68:69,
1/1J/107:109
No text annotation
Not in a motif group
homologous
J3_7RQB_015
NA

Problematic loops

No problematic loops


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