6QNR Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_6QNR_001 | 1/13/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
HL_6QNR_003 | 1/13/157:164 | No text annotation Not in a motif group | ||
HL_6QNR_004 | 1/13/186F:191A | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_61849.1 | |
HL_6QNR_005 | 1/13/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.2 | |
HL_6QNR_006 | 1/13/258:268 | No text annotation Not in a motif group | geometric HL_4WSM_226 HL_22031.2 | |
HL_6QNR_007 | 1/13/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_35490.2 | |
HL_6QNR_008 | 1/13/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
HL_6QNR_010 | 1/13/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_35490.2 | |
HL_6QNR_011 | 1/13/419:424 | No text annotation Not in a motif group | homologous HL_6CZR_082 HL_03562.2 | |
HL_6QNR_012 | 1/13/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
HL_6QNR_013 | 1/13/521:528 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_70546.1 | |
HL_6QNR_014 | 1/13/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.3 | |
HL_6QNR_015 | 1/13/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
HL_6QNR_016 | 1/13/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
HL_6QNR_017 | 1/13/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
HL_6QNR_018 | 1/13/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.2 | |
HL_6QNR_019 | 1/13/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_35490.2 | |
HL_6QNR_020 | 1/13/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_35490.2 | |
HL_6QNR_021 | 1/13/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
HL_6QNR_022 | 1/13/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_35490.2 | |
HL_6QNR_023 | 1/13/1028A:1032B | No text annotation Not in a motif group | ||
HL_6QNR_024 | 1/13/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_35490.2 | |
HL_6QNR_025 | 1/13/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
HL_6QNR_026 | 1/13/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
HL_6QNR_027 | 1/13/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_35490.2 | |
HL_6QNR_028 | 1/13/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_35490.2 | |
HL_6QNR_029 | 1/13/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.1 | |
HL_6QNR_030 | 1/13/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
HL_6QNR_031 | 1/13/1449:1454 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
HL_6QNR_032 | 1/13/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
HL_6QNR_033 | 1/14/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.2 | |
HL_6QNR_034 | 1/14/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
HL_6QNR_035 | 1/14/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_70546.1 | |
HL_6QNR_036 | 1/14/137A:141A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.3 | |
HL_6QNR_038 | 1/14/194:201 | No text annotation Not in a motif group | geometric HL_4V9F_006 HL_06192.2 | |
HL_6QNR_039 | 1/14/225:230 | No text annotation Not in a motif group | homologous HL_7A0S_007 HL_02862.2 | |
HL_6QNR_040 | 1/14/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
HL_6QNR_041 | 1/14/270J:270P | No text annotation Not in a motif group | ||
HL_6QNR_042 | 1/14/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_41998.1 | |
HL_6QNR_043 | 1/14/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_70546.1 | |
HL_6QNR_044 | 1/14/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.9 | |
HL_6QNR_045 | 1/14/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
HL_6QNR_046 | 1/14/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
HL_6QNR_047 | 1/14/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_35490.2 | |
HL_6QNR_048 | 1/14/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_35490.2 | |
HL_6QNR_049 | 1/14/544:549 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
HL_6QNR_050 | 1/14/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_41998.1 | |
HL_6QNR_051 | 1/14/611:617 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_32369.1 | |
HL_6QNR_052 | 1/14/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_35490.2 | |
HL_6QNR_053 | 1/14/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_35490.2 | |
HL_6QNR_054 | 1/14/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
HL_6QNR_055 | 1/14/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
HL_6QNR_056 | 1/14/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_56241.1 | |
HL_6QNR_057 | 1/14/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_53619.1 | |
HL_6QNR_059 | 1/14/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_35490.2 | |
HL_6QNR_060 | 1/14/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
HL_6QNR_061 | 1/14/1170:1179 | No text annotation Not in a motif group | ||
HL_6QNR_062 | 1/14/1223:1228 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_35490.2 | |
HL_6QNR_063 | 1/14/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_41998.1 | |
HL_6QNR_064 | 1/14/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
HL_6QNR_065 | 1/14/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
HL_6QNR_066 | 1/14/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
HL_6QNR_067 | 1/14/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
HL_6QNR_068 | 1/14/1491:1499 | No text annotation Not in a motif group | geometric HL_2A43_001 HL_26881.3 | |
HL_6QNR_069 | 1/14/1532:1539 | No text annotation Not in a motif group | ||
HL_6QNR_070 | 1/14/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.5 | |
HL_6QNR_071 | 1/14/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
HL_6QNR_072 | 1/14/1630A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.2 | |
HL_6QNR_073 | 1/14/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
HL_6QNR_074 | 1/14/1727:1733 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
HL_6QNR_075 | 1/14/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.5 | |
HL_6QNR_076 | 1/14/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
HL_6QNR_077 | 1/14/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_35490.2 | |
HL_6QNR_078 | 1/14/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_35490.2 | |
HL_6QNR_079 | 1/14/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
HL_6QNR_080 | 1/14/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
HL_6QNR_081 | 1/14/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
HL_6QNR_082 | 1/14/2142:2149 | No text annotation Not in a motif group | ||
HL_6QNR_083 | 1/14/2209:2215 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
HL_6QNR_084 | 1/14/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
HL_6QNR_085 | 1/14/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
HL_6QNR_086 | 1/14/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
HL_6QNR_087 | 1/14/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.4 | |
HL_6QNR_088 | 1/14/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_53619.1 | |
HL_6QNR_089 | 1/14/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_35490.2 | |
HL_6QNR_090 | 1/14/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_40210.2 | |
HL_6QNR_092 | 1/14/2527:2536 | tRNA anticodon loop Not in a motif group | geometric HL_3W3S_002 HL_71170.1 | |
HL_6QNR_093 | 1/14/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
HL_6QNR_094 | 1/14/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_35490.2 | |
HL_6QNR_095 | 1/14/2658:2663 | GNRA Not in a motif group | geometric HL_4QLM_001 HL_40210.2 | |
HL_6QNR_096 | 1/14/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
HL_6QNR_097 | 1/14/2745:2759 | No text annotation Not in a motif group | homologous HL_7A0S_065 HL_56677.7 | |
HL_6QNR_099 | 1/14/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_64690.1 | |
HL_6QNR_100 | 1/14/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_35490.2 | |
HL_6QNR_101 | 1/16/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 HL_87939.2 | |
HL_6QNR_102 | 1/16/86:90 | GNRA Not in a motif group | homologous HL_4V9F_072 HL_35490.2 | |
HL_6QNR_103 | 1/1G/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
HL_6QNR_105 | 1/1G/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_35490.2 | |
HL_6QNR_106 | 1/1G/186F:191A | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_61849.1 | |
HL_6QNR_107 | 1/1G/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.2 | |
HL_6QNR_108 | 1/1G/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
HL_6QNR_109 | 1/1G/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_35490.2 | |
HL_6QNR_110 | 1/1G/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
HL_6QNR_111 | 1/1G/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
HL_6QNR_112 | 1/1G/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_35490.2 | |
HL_6QNR_113 | 1/1G/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
HL_6QNR_114 | 1/1G/457:475 | No text annotation Not in a motif group | geometric HL_3RG5_006 HL_71170.1 | |
HL_6QNR_115 | 1/1G/521:528 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
HL_6QNR_116 | 1/1G/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
HL_6QNR_117 | 1/1G/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
HL_6QNR_118 | 1/1G/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
HL_6QNR_119 | 1/1G/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
HL_6QNR_120 | 1/1G/838:848 | No text annotation Not in a motif group | ||
HL_6QNR_121 | 1/1G/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_35490.2 | |
HL_6QNR_122 | 1/1G/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_35490.2 | |
HL_6QNR_123 | 1/1G/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
HL_6QNR_124 | 1/1G/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_35490.2 | |
HL_6QNR_126 | 1/1G/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_35490.2 | |
HL_6QNR_127 | 1/1G/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
HL_6QNR_128 | 1/1G/1133:1141 | No text annotation Not in a motif group | geometric HL_5TBW_021 HL_33817.1 | |
HL_6QNR_129 | 1/1G/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_35490.2 | |
HL_6QNR_130 | 1/1G/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_35490.2 | |
HL_6QNR_131 | 1/1G/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.1 | |
HL_6QNR_132 | 1/1G/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
HL_6QNR_133 | 1/1G/1449:1454 | No text annotation Not in a motif group | geometric HL_4TUW_002 HL_28980.2 | |
HL_6QNR_134 | 1/1G/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
HL_6QNR_135 | 1/1H/58:67 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.2 | |
HL_6QNR_136 | 1/1H/86:94 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
HL_6QNR_137 | 1/1H/121:126 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_70546.1 | |
HL_6QNR_138 | 1/1H/136:141 | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.3 | |
HL_6QNR_139 | 1/1H/154:162 | No text annotation Not in a motif group | ||
HL_6QNR_140 | 1/1H/184:191 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
HL_6QNR_141 | 1/1H/215:220 | No text annotation Not in a motif group | homologous HL_7A0S_007 HL_02862.2 | |
HL_6QNR_142 | 1/1H/236:242 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
HL_6QNR_143 | 1/1H/270:276 | No text annotation Not in a motif group | geometric HL_4WRT_001 HL_56241.1 | |
HL_6QNR_144 | 1/1H/330:337 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_41998.1 | |
HL_6QNR_145 | 1/1H/344:348 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_70546.1 | |
HL_6QNR_146 | 1/1H/352:360 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.9 | |
HL_6QNR_147 | 1/1H/410:420 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
HL_6QNR_148 | 1/1H/438:445 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
HL_6QNR_149 | 1/1H/489:494 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_35490.2 | |
HL_6QNR_150 | 1/1H/514:519 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_35490.2 | |
HL_6QNR_151 | 1/1H/569:574 | GNRA Not in a motif group | geometric HL_3V7E_003 HL_35490.2 | |
HL_6QNR_152 | 1/1H/590:599 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_41998.1 | |
HL_6QNR_153 | 1/1H/636:642 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_32369.1 | |
HL_6QNR_154 | 1/1H/655:660 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_35490.2 | |
HL_6QNR_155 | 1/1H/667:673 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_35490.2 | |
HL_6QNR_157 | 1/1H/760:767 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
HL_6QNR_158 | 1/1H/792:801 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
HL_6QNR_159 | 1/1H/827:833 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_56241.1 | |
HL_6QNR_160 | 1/1H/874:879 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_53619.1 | |
HL_6QNR_162 | 1/1H/1001:1008 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_35490.2 | |
HL_6QNR_163 | 1/1H/1025:1032 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
HL_6QNR_165 | 1/1H/1217:1225 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
HL_6QNR_166 | 1/1H/1269:1274 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_35490.2 | |
HL_6QNR_167 | 1/1H/1328:1336 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_41998.1 | |
HL_6QNR_168 | 1/1H/1371:1377 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
HL_6QNR_169 | 1/1H/1410:1415 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
HL_6QNR_170 | 1/1H/1436:1445 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
HL_6QNR_171 | 1/1H/1500:1507 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
HL_6QNR_172 | 1/1H/1539:1545 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
HL_6QNR_174 | 1/1H/1613:1616 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.5 | |
HL_6QNR_175 | 1/1H/1659:1666 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_64430.2 | |
HL_6QNR_176 | 1/1H/1678:1683 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.2 | |
HL_6QNR_177 | 1/1H/1739:1744 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
HL_6QNR_178 | 1/1H/1766:1772 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
HL_6QNR_179 | 1/1H/1784:1788 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.5 | |
HL_6QNR_180 | 1/1H/1809:1819 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
HL_6QNR_181 | 1/1H/1838:1843 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_35490.2 | |
HL_6QNR_182 | 1/1H/1896:1901 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_35490.2 | |
HL_6QNR_183 | 1/1H/1932:1944 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
HL_6QNR_184 | 1/1H/1972:1980 | No text annotation Not in a motif group | homologous HL_7A0S_048 HL_51824.1 | |
HL_6QNR_185 | 1/1H/2050:2059 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
HL_6QNR_186 | 1/1H/2166:2171 | UNCG Not in a motif group | homologous HL_3U4M_001 HL_03562.2 | |
HL_6QNR_187 | 1/1H/2227:2232 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
HL_6QNR_188 | 1/1H/2261:2269 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
HL_6QNR_189 | 1/1H/2277:2289 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
HL_6QNR_190 | 1/1H/2316:2326 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
HL_6QNR_191 | 1/1H/2337:2344 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.4 | |
HL_6QNR_192 | 1/1H/2368:2375 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_53619.1 | |
HL_6QNR_193 | 1/1H/2387:2392 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_35490.2 | |
HL_6QNR_194 | 1/1H/2417:2426 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_40210.2 | |
HL_6QNR_195 | 1/1H/2484:2492 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
HL_6QNR_196 | 1/1H/2541:2548 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_91104.1 | |
HL_6QNR_197 | 1/1H/2564:2570 | No text annotation Not in a motif group | homologous HL_7RQB_062 NA | |
HL_6QNR_198 | 1/1H/2607:2612 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_35490.2 | |
HL_6QNR_199 | 1/1H/2671:2676 | GNRA Not in a motif group | geometric HL_5J7L_197 HL_35490.2 | |
HL_6QNR_200 | 1/1H/2714:2719 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
HL_6QNR_201 | 1/1H/2759:2773 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
HL_6QNR_203 | 1/1H/2830:2838 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_64690.1 | |
HL_6QNR_204 | 1/1H/2867:2872 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_35490.2 | |
HL_6QNR_205 | 1/1J/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.2 | |
HL_6QNR_206 | 1/1J/86:90 | No text annotation Not in a motif group | ||
HL_6QNR_208 | 1/1K/30:40 | No text annotation Not in a motif group | homologous HL_1B23_002 NA | |
HL_6QNR_209 | 1/1K/53:61 | No text annotation Not in a motif group | homologous HL_1H4S_003 NA | |
HL_6QNR_210 | 1/1L/12:24 | No text annotation Not in a motif group | ||
HL_6QNR_211 | 1/1L/30:40 | No text annotation Not in a motif group | homologous HL_1B23_002 NA | |
HL_6QNR_212 | 1/1L/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
HL_6QNR_213 | 1/2K/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
HL_6QNR_214 | 1/2K/30:40 | No text annotation Not in a motif group | homologous HL_5EL4_222 NA | |
HL_6QNR_215 | 1/2K/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
HL_6QNR_216 | 1/2L/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
HL_6QNR_217 | 1/2L/30:40 | No text annotation Not in a motif group | homologous HL_5EL4_222 NA | |
HL_6QNR_218 | 1/2L/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
HL_6QNR_219 | 1/3K/12:23 | No text annotation Not in a motif group | ||
HL_6QNR_221 | 1/3K/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4LCK_003 HL_41998.1 | |
HL_6QNR_222 | 1/3L/13:22 | No text annotation Not in a motif group | homologous HL_5E81_219 NA | |
HL_6QNR_223 | 1/3L/29:41 | No text annotation Not in a motif group | homologous HL_6GSL_221 HL_06285.3 | |
HL_6QNR_224 | 1/3L/49:65 | No text annotation Not in a motif group | homologous HL_5E81_221 NA | |
HL_6QNR_225 | 1/5K/13:22 | No text annotation Not in a motif group | homologous HL_3KFU_004 NA | |
HL_6QNR_226 | 1/5K/30:40 | No text annotation Not in a motif group | homologous HL_1B23_002 NA | |
HL_6QNR_227 | 1/5K/53:61 | No text annotation Not in a motif group | homologous HL_1FIR_003 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_6QNR_002 | No text annotation | ||
HL_6QNR_009 | No text annotation | ||
HL_6QNR_037 | No text annotation | ||
HL_6QNR_058 | No text annotation | ||
HL_6QNR_091 | No text annotation | ||
HL_6QNR_098 | No text annotation | ||
HL_6QNR_104 | No text annotation | ||
HL_6QNR_125 | No text annotation | ||
HL_6QNR_156 | No text annotation | ||
HL_6QNR_161 | No text annotation | ||
HL_6QNR_164 | No text annotation | ||
HL_6QNR_173 | No text annotation | ||
HL_6QNR_202 | No text annotation | ||
HL_6QNR_207 | No text annotation | ||
HL_6QNR_220 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_6QNR_001 | 1/13/30:32, 1/13/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.3 | |
IL_6QNR_002 | 1/13/44:45, 1/13/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.6 | |
IL_6QNR_003 | 1/13/47:52, 1/13/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_14177.1 | |
IL_6QNR_004 | 1/13/54:56, 1/13/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_80097.1 | |
IL_6QNR_005 | 1/13/63:66, 1/13/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
IL_6QNR_006 | 1/13/67:69, 1/13/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.2 | |
IL_6QNR_007 | 1/13/129:131, 1/13/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
IL_6QNR_008 | 1/13/132:136, 1/13/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
IL_6QNR_009 | 1/13/147:153, 1/13/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
IL_6QNR_010 | 1/13/185:186B, 1/13/191E:192 | No text annotation Not in a motif group | ||
IL_6QNR_011 | 1/13/242:247, 1/13/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
IL_6QNR_012 | 1/13/249:252, 1/13/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
IL_6QNR_013 | 1/13/292:293, 1/13/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
IL_6QNR_014 | 1/13/367:369, 1/13/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.16 | |
IL_6QNR_015 | 1/13/371:375, 1/13/389:390 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
IL_6QNR_016 | 1/13/375:376, 1/13/387:389 | Single bulged G Not in a motif group | homologous IL_4LFB_016 IL_00225.3 | |
IL_6QNR_017 | 1/13/409:416, 1/13/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
IL_6QNR_018 | 1/13/446:450, 1/13/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
IL_6QNR_019 | 1/13/450:455, 1/13/477:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
IL_6QNR_020 | 1/13/504:511, 1/13/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
IL_6QNR_021 | 1/13/515:521, 1/13/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
IL_6QNR_022 | 1/13/569:575, 1/13/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
IL_6QNR_023 | 1/13/580:584, 1/13/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
IL_6QNR_024 | 1/13/594:596, 1/13/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.3 | |
IL_6QNR_025 | 1/13/597:598, 1/13/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.8 | |
IL_6QNR_026 | 1/13/605:612, 1/13/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
IL_6QNR_027 | 1/13/654:655, 1/13/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
IL_6QNR_028 | 1/13/657:658, 1/13/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.3 | |
IL_6QNR_029 | 1/13/662:666, 1/13/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
IL_6QNR_030 | 1/13/673:678, 1/13/712:717 | No text annotation Not in a motif group | geometric IL_5J7L_034 IL_04668.2 | |
IL_6QNR_031 | 1/13/683:688, 1/13/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
IL_6QNR_032 | 1/13/774:778, 1/13/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
IL_6QNR_033 | 1/13/779:783, 1/13/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
IL_6QNR_034 | 1/13/887:894, 1/13/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
IL_6QNR_035 | 1/13/922:923, 1/13/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.6 | |
IL_6QNR_036 | 1/13/925:927, 1/13/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.3 | |
IL_6QNR_037 | 1/13/933:936, 1/13/1379:1384 | No text annotation Not in a motif group | geometric IL_6CZR_149 IL_93211.1 | |
IL_6QNR_038 | 1/13/953:954, 1/13/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.4 | |
IL_6QNR_039 | 1/13/993:998A, 1/13/1042:1045 | No text annotation Not in a motif group | ||
IL_6QNR_040 | 1/13/1048:1050, 1/13/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.16 | |
IL_6QNR_041 | 1/13/1050:1052, 1/13/1206:1208 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_70707.2 | |
IL_6QNR_042 | 1/13/1052:1056, 1/13/1204:1206 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
IL_6QNR_043 | 1/13/1057:1058, 1/13/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_80097.1 | |
IL_6QNR_044 | 1/13/1060:1061, 1/13/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.16 | |
IL_6QNR_045 | 1/13/1061:1063, 1/13/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_86319.2 | |
IL_6QNR_046 | 1/13/1124:1128, 1/13/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
IL_6QNR_047 | 1/13/1129:1132, 1/13/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
IL_6QNR_048 | 1/13/1158:1161, 1/13/1175:1181 | No text annotation Not in a motif group | geometric IL_4LFB_050 IL_42032.1 | |
IL_6QNR_049 | 1/13/1247:1253, 1/13/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
IL_6QNR_050 | 1/13/1255:1258, 1/13/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
IL_6QNR_051 | 1/13/1259:1260, 1/13/1274:1276 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_80097.1 | |
IL_6QNR_052 | 1/13/1260:1262, 1/13/1273:1274 | Minor groove platform Not in a motif group | homologous IL_4LFB_054 IL_80097.1 | |
IL_6QNR_053 | 1/13/1303:1308, 1/13/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
IL_6QNR_054 | 1/13/1399:1401, 1/13/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
IL_6QNR_055 | 1/13/1401:1405, 1/13/1496:1501 | No text annotation Not in a motif group | homologous IL_4LFB_057 NA | |
IL_6QNR_056 | 1/13/1405:1409, 1/13/1491:1496 | No text annotation Not in a motif group | homologous IL_4LFB_058 NA | |
IL_6QNR_057 | 1/13/1412:1414, 1/13/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.2 | |
IL_6QNR_058 | 1/13/1416:1419, 1/13/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.10 | |
IL_6QNR_059 | 1/13/1431:1435, 1/13/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
IL_6QNR_060 | 1/13/1435:1437, 1/13/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_86319.2 | |
IL_6QNR_061 | 1/13/1440:1447, 1/13/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
IL_6QNR_062 | 1/14/24:30, 1/14/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
IL_6QNR_063 | 1/14/36:37, 1/14/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.6 | |
IL_6QNR_064 | 1/14/43:45, 1/14/433:436 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
IL_6QNR_065 | 1/14/81:85, 1/14/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
IL_6QNR_066 | 1/14/183:184, 1/14/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.4 | |
IL_6QNR_067 | 1/14/188:194, 1/14/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
IL_6QNR_068 | 1/14/239:245, 1/14/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
IL_6QNR_069 | 1/14/271:272, 1/14/365:366 | No text annotation Not in a motif group | ||
IL_6QNR_070 | 1/14/273:273A, 1/14/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.3 | |
IL_6QNR_071 | 1/14/273F:279, 1/14/361:363 | No text annotation Not in a motif group | ||
IL_6QNR_072 | 1/14/280:284, 1/14/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
IL_6QNR_073 | 1/14/288:290, 1/14/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
IL_6QNR_074 | 1/14/293:295, 1/14/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
IL_6QNR_075 | 1/14/481:484, 1/14/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
IL_6QNR_076 | 1/14/564:566, 1/14/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 IL_86319.2 | |
IL_6QNR_077 | 1/14/606:609A, 1/14/618A:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
IL_6QNR_078 | 1/14/672:674, 1/14/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_86319.2 | |
IL_6QNR_079 | 1/14/674:678, 1/14/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.6 | |
IL_6QNR_080 | 1/14/697:698, 1/14/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.6 | |
IL_6QNR_081 | 1/14/702:703, 1/14/728:730 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.3 | |
IL_6QNR_082 | 1/14/703:707, 1/14/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
IL_6QNR_083 | 1/14/738:741, 1/14/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
IL_6QNR_084 | 1/14/775:777, 1/14/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
IL_6QNR_085 | 1/14/837:838, 1/14/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
IL_6QNR_086 | 1/14/844:846, 1/14/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.4 | |
IL_6QNR_087 | 1/14/846:850, 1/14/928:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
IL_6QNR_088 | 1/14/857:862, 1/14/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7A0S_027 IL_81631.1 | |
IL_6QNR_089 | 1/14/862:863, 1/14/913:915 | Minor groove platform Not in a motif group | geometric IL_4V9F_034 IL_42622.4 | |
IL_6QNR_090 | 1/14/864:868, 1/14/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
IL_6QNR_093 | 1/14/952:954, 1/14/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_86319.2 | |
IL_6QNR_094 | 1/14/994:996, 1/14/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
IL_6QNR_095 | 1/14/998:1002, 1/14/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
IL_6QNR_096 | 1/14/1004:1013, 1/14/1149:1151 | No text annotation Not in a motif group | ||
IL_6QNR_097 | 1/14/1018:1024, 1/14/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
IL_6QNR_098 | 1/14/1024:1030, 1/14/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
IL_6QNR_099 | 1/14/1031:1034, 1/14/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_43275.1 | |
IL_6QNR_102 | 1/14/1196:1198, 1/14/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.4 | |
IL_6QNR_103 | 1/14/1202:1206, 1/14/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
IL_6QNR_104 | 1/14/1208:1215, 1/14/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
IL_6QNR_105 | 1/14/1219:1221, 1/14/1229A:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.6 | |
IL_6QNR_106 | 1/14/1262:1269, 1/14/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
IL_6QNR_107 | 1/14/1310:1313, 1/14/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
IL_6QNR_108 | 1/14/1319:1323, 1/14/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
IL_6QNR_109 | 1/14/1351:1355, 1/14/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
IL_6QNR_110 | 1/14/1357:1361, 1/14/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
IL_6QNR_111 | 1/14/1415:1416, 1/14/1582:1587 | No text annotation Not in a motif group | geometric IL_7RQB_054 IL_67474.4 | |
IL_6QNR_112 | 1/14/1416:1421, 1/14/1577:1582 | No text annotation Not in a motif group | ||
IL_6QNR_113 | 1/14/1433:1435, 1/14/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
IL_6QNR_114 | 1/14/1437:1440, 1/14/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
IL_6QNR_115 | 1/14/1448:1449A, 1/14/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.4 | |
IL_6QNR_116 | 1/14/1450:1451, 1/14/1459:1461 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.6 | |
IL_6QNR_117 | 1/14/1469:1473, 1/14/1520:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
IL_6QNR_118 | 1/14/1482:1483, 1/14/1506:1512 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
IL_6QNR_119 | 1/14/1489:1491, 1/14/1499:1500 | Single bulged A Not in a motif group | geometric IL_7RQB_062 IL_37497.6 | |
IL_6QNR_120 | 1/14/1526:1530, 1/14/1541:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
IL_6QNR_121 | 1/14/1651:1656, 1/14/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
IL_6QNR_122 | 1/14/1663:1665, 1/14/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
IL_6QNR_123 | 1/14/1666:1669, 1/14/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
IL_6QNR_124 | 1/14/1669:1674, 1/14/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_76273.1 | |
IL_6QNR_125 | 1/14/1686:1691, 1/14/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
IL_6QNR_126 | 1/14/1770:1771, 1/14/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.6 | |
IL_6QNR_127 | 1/14/1798:1804, 1/14/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
IL_6QNR_128 | 1/14/1837:1840, 1/14/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.3 | |
IL_6QNR_129 | 1/14/1841:1842, 1/14/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
IL_6QNR_130 | 1/14/1846:1849, 1/14/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.3 | |
IL_6QNR_131 | 1/14/1851:1855, 1/14/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
IL_6QNR_132 | 1/14/1856:1861, 1/14/1881:1886 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
IL_6QNR_133 | 1/14/1933:1934, 1/14/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
IL_6QNR_134 | 1/14/1934:1945, 1/14/1961:1964 | No text annotation Not in a motif group | homologous IL_7RQB_077 NA | |
IL_6QNR_135 | 1/14/2050:2052, 1/14/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.3 | |
IL_6QNR_136 | 1/14/2054:2057, 1/14/2611:2615 | No text annotation Not in a motif group | ||
IL_6QNR_137 | 1/14/2067:2069, 1/14/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.16 | |
IL_6QNR_138 | 1/14/2070:2071, 1/14/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.4 | |
IL_6QNR_139 | 1/14/2081:2083, 1/14/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
IL_6QNR_140 | 1/14/2085:2087, 1/14/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_86319.2 | |
IL_6QNR_141 | 1/14/2107:2110, 1/14/2179:2182 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_30621.4 | |
IL_6QNR_143 | 1/14/2124:2129, 1/14/2160:2174 | No text annotation Not in a motif group | ||
IL_6QNR_144 | 1/14/2129:2142, 1/14/2149:2160 | No text annotation Not in a motif group | ||
IL_6QNR_145 | 1/14/2297:2299, 1/14/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 IL_38958.7 | |
IL_6QNR_146 | 1/14/2350:2353, 1/14/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.10 | |
IL_6QNR_147 | 1/14/2401:2403, 1/14/2414:2415 | No text annotation Not in a motif group | ||
IL_6QNR_148 | 1/14/2453:2454, 1/14/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.4 | |
IL_6QNR_149 | 1/14/2454:2455, 1/14/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.3 | |
IL_6QNR_150 | 1/14/2457:2459, 1/14/2493:2494 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.3 | |
IL_6QNR_151 | 1/14/2459:2461, 1/14/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
IL_6QNR_152 | 1/14/2466:2470, 1/14/2480:2484 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
IL_6QNR_153 | 1/14/2507:2508, 1/14/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
IL_6QNR_154 | 1/14/2510:2512, 1/14/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
IL_6QNR_155 | 1/14/2512:2513, 1/14/2571:2574 | No text annotation Not in a motif group | geometric IL_4WF9_096 IL_71530.2 | |
IL_6QNR_156 | 1/14/2522:2523, 1/14/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
IL_6QNR_157 | 1/14/2588:2590, 1/14/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
IL_6QNR_158 | 1/14/2591:2592, 1/14/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.6 | |
IL_6QNR_159 | 1/14/2636:2640, 1/14/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
IL_6QNR_160 | 1/14/2651:2658, 1/14/2663:2669 | No text annotation Not in a motif group | ||
IL_6QNR_161 | 1/14/2680:2684, 1/14/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
IL_6QNR_162 | 1/14/2687:2691, 1/14/2718:2722 | No text annotation Not in a motif group | ||
IL_6QNR_163 | 1/14/2695:2696, 1/14/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
IL_6QNR_164 | 1/14/2737:2742, 1/14/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
IL_6QNR_165 | 1/14/2838:2839, 1/14/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
IL_6QNR_166 | 1/14/2843:2846, 1/14/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
IL_6QNR_167 | 1/14/2847:2852, 1/14/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
IL_6QNR_168 | 1/16/1:2, 1/16/118:119 | No text annotation Not in a motif group | ||
IL_6QNR_169 | 1/16/17:18, 1/16/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.6 | |
IL_6QNR_170 | 1/16/23:28, 1/16/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
IL_6QNR_171 | 1/16/30:32, 1/16/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
IL_6QNR_172 | 1/16/34:38, 1/16/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
IL_6QNR_173 | 1/16/71:79, 1/16/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
IL_6QNR_174 | 1/1G/30:32, 1/1G/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.3 | |
IL_6QNR_175 | 1/1G/44:45, 1/1G/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.6 | |
IL_6QNR_176 | 1/1G/47:52, 1/1G/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_14177.1 | |
IL_6QNR_177 | 1/1G/54:56, 1/1G/356:357 | Minor groove platform Not in a motif group | homologous IL_6CZR_116 IL_80097.1 | |
IL_6QNR_178 | 1/1G/63:66, 1/1G/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
IL_6QNR_179 | 1/1G/67:69, 1/1G/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.2 | |
IL_6QNR_180 | 1/1G/128:131, 1/1G/231:233 | No text annotation Not in a motif group | ||
IL_6QNR_181 | 1/1G/132:136, 1/1G/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
IL_6QNR_182 | 1/1G/148:153, 1/1G/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
IL_6QNR_183 | 1/1G/185:186B, 1/1G/191E:192 | No text annotation Not in a motif group | ||
IL_6QNR_184 | 1/1G/242:247, 1/1G/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
IL_6QNR_185 | 1/1G/249:252, 1/1G/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
IL_6QNR_186 | 1/1G/292:293, 1/1G/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
IL_6QNR_187 | 1/1G/367:369, 1/1G/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.16 | |
IL_6QNR_188 | 1/1G/371:375, 1/1G/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
IL_6QNR_189 | 1/1G/375:376, 1/1G/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.3 | |
IL_6QNR_190 | 1/1G/409:416, 1/1G/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
IL_6QNR_191 | 1/1G/446:450, 1/1G/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
IL_6QNR_192 | 1/1G/450:455, 1/1G/477:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
IL_6QNR_193 | 1/1G/504:511, 1/1G/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
IL_6QNR_194 | 1/1G/515:521, 1/1G/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
IL_6QNR_195 | 1/1G/569:575, 1/1G/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
IL_6QNR_196 | 1/1G/580:584, 1/1G/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
IL_6QNR_197 | 1/1G/594:596, 1/1G/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.3 | |
IL_6QNR_198 | 1/1G/597:598, 1/1G/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.8 | |
IL_6QNR_199 | 1/1G/605:612, 1/1G/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
IL_6QNR_200 | 1/1G/654:655, 1/1G/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
IL_6QNR_201 | 1/1G/657:658, 1/1G/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.3 | |
IL_6QNR_202 | 1/1G/662:666, 1/1G/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
IL_6QNR_203 | 1/1G/673:678, 1/1G/712:717 | No text annotation Not in a motif group | homologous IL_5J7L_034 IL_04668.2 | |
IL_6QNR_204 | 1/1G/683:688, 1/1G/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
IL_6QNR_205 | 1/1G/774:778, 1/1G/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
IL_6QNR_206 | 1/1G/779:783, 1/1G/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
IL_6QNR_207 | 1/1G/887:894, 1/1G/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
IL_6QNR_208 | 1/1G/922:923, 1/1G/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.6 | |
IL_6QNR_209 | 1/1G/925:927, 1/1G/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.3 | |
IL_6QNR_210 | 1/1G/933:935, 1/1G/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
IL_6QNR_211 | 1/1G/953:954, 1/1G/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.4 | |
IL_6QNR_212 | 1/1G/993:997, 1/1G/1044:1045 | Minor groove platform Not in a motif group | homologous IL_4LFB_039 IL_47078.1 | |
IL_6QNR_213 | 1/1G/1048:1050, 1/1G/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.16 | |
IL_6QNR_214 | 1/1G/1050:1052, 1/1G/1206:1208 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_64417.2 | |
IL_6QNR_215 | 1/1G/1052:1057, 1/1G/1203:1206 | No text annotation Not in a motif group | ||
IL_6QNR_216 | 1/1G/1057:1058, 1/1G/1199:1203 | Minor groove platform Not in a motif group | geometric IL_5J7L_048 IL_80097.1 | |
IL_6QNR_217 | 1/1G/1060:1061, 1/1G/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.16 | |
IL_6QNR_218 | 1/1G/1061:1063, 1/1G/1193:1195 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_86319.2 | |
IL_6QNR_219 | 1/1G/1124:1129, 1/1G/1143:1149 | No text annotation Not in a motif group | homologous IL_4LFB_048 IL_85222.1 | |
IL_6QNR_220 | 1/1G/1129:1132, 1/1G/1142:1143 | Minor groove platform Not in a motif group | geometric IL_5J7L_052 IL_15052.1 | |
IL_6QNR_221 | 1/1G/1247:1253, 1/1G/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
IL_6QNR_222 | 1/1G/1255:1258, 1/1G/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
IL_6QNR_223 | 1/1G/1259:1263, 1/1G/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
IL_6QNR_224 | 1/1G/1303:1308, 1/1G/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
IL_6QNR_225 | 1/1G/1399:1401, 1/1G/1501:1504 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
IL_6QNR_226 | 1/1G/1401:1405, 1/1G/1496:1501 | No text annotation Not in a motif group | homologous IL_4LFB_057 NA | |
IL_6QNR_227 | 1/1G/1405:1409, 1/1G/1491:1496 | No text annotation Not in a motif group | ||
IL_6QNR_228 | 1/1G/1412:1414, 1/1G/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.2 | |
IL_6QNR_229 | 1/1G/1416:1419, 1/1G/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.10 | |
IL_6QNR_230 | 1/1G/1431:1435, 1/1G/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
IL_6QNR_231 | 1/1G/1435:1437, 1/1G/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_86319.2 | |
IL_6QNR_232 | 1/1G/1440:1447, 1/1G/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
IL_6QNR_233 | 1/1H/24:30, 1/1H/536:542 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
IL_6QNR_234 | 1/1H/36:37, 1/1H/469:471 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.6 | |
IL_6QNR_235 | 1/1H/42:43, 1/1H/462:464 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.4 | |
IL_6QNR_236 | 1/1H/80:84, 1/1H/96:103 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
IL_6QNR_237 | 1/1H/173:174, 1/1H/202:204 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.4 | |
IL_6QNR_238 | 1/1H/178:184, 1/1H/191:198 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
IL_6QNR_239 | 1/1H/229:235, 1/1H/243:248 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
IL_6QNR_240 | 1/1H/292:293, 1/1H/393:395 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.3 | |
IL_6QNR_242 | 1/1H/305:309, 1/1H/382:385 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
IL_6QNR_243 | 1/1H/313:315, 1/1H/375:378 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
IL_6QNR_244 | 1/1H/318:320, 1/1H/368:372 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
IL_6QNR_245 | 1/1H/508:511, 1/1H/522:535 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
IL_6QNR_246 | 1/1H/588:590, 1/1H/599:601 | No text annotation Not in a motif group | homologous IL_5J7L_257 IL_86319.2 | |
IL_6QNR_247 | 1/1H/630:634, 1/1H/644:648 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
IL_6QNR_248 | 1/1H/720:722, 1/1H/854:856 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_86319.2 | |
IL_6QNR_249 | 1/1H/722:726, 1/1H/847:854 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.6 | |
IL_6QNR_250 | 1/1H/745:746, 1/1H/811:813 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.6 | |
IL_6QNR_251 | 1/1H/750:751, 1/1H/776:778 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.3 | |
IL_6QNR_252 | 1/1H/751:755, 1/1H/772:776 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
IL_6QNR_253 | 1/1H/786:789, 1/1H/804:806 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
IL_6QNR_254 | 1/1H/823:825, 1/1H/835:839 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
IL_6QNR_255 | 1/1H/885:886, 1/1H/986:988 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
IL_6QNR_256 | 1/1H/892:894, 1/1H/977:980 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.4 | |
IL_6QNR_257 | 1/1H/894:898, 1/1H/974:977 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
IL_6QNR_258 | 1/1H/906:910, 1/1H/962:966 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_38862.1 | |
IL_6QNR_259 | 1/1H/910:911, 1/1H/960:962 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.4 | |
IL_6QNR_260 | 1/1H/912:916, 1/1H/956:959 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
IL_6QNR_261 | 1/1H/923:927, 1/1H/945:949 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
IL_6QNR_263 | 1/1H/998:1000, 1/1H/1009:1011 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_86319.2 | |
IL_6QNR_264 | 1/1H/1041:1043, 1/1H/1206:1207 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
IL_6QNR_265 | 1/1H/1045:1049, 1/1H/1200:1204 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
IL_6QNR_266 | 1/1H/1051:1058, 1/1H/1197:1198 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
IL_6QNR_267 | 1/1H/1058:1060, 1/1H/1196:1197 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.16 | |
IL_6QNR_268 | 1/1H/1065:1071, 1/1H/1186:1191 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
IL_6QNR_270 | 1/1H/1078:1081, 1/1H/1168:1170 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_43275.1 | |
IL_6QNR_271 | 1/1H/1090:1099, 1/1H/1154:1159 | No text annotation Not in a motif group | ||
IL_6QNR_274 | 1/1H/1242:1244, 1/1H/1294:1297 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.4 | |
IL_6QNR_275 | 1/1H/1248:1252, 1/1H/1287:1290 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
IL_6QNR_276 | 1/1H/1254:1261, 1/1H/1281:1285 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
IL_6QNR_277 | 1/1H/1265:1267, 1/1H/1276:1277 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.6 | |
IL_6QNR_278 | 1/1H/1309:1316, 1/1H/2034:2040 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
IL_6QNR_279 | 1/1H/1357:1360, 1/1H/1650:1651 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
IL_6QNR_280 | 1/1H/1366:1370, 1/1H/1378:1380 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
IL_6QNR_281 | 1/1H/1398:1402, 1/1H/1423:1427 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
IL_6QNR_282 | 1/1H/1404:1408, 1/1H/1417:1421 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
IL_6QNR_283 | 1/1H/1462:1463, 1/1H/1630:1634 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
IL_6QNR_284 | 1/1H/1464:1468, 1/1H/1625:1629 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
IL_6QNR_285 | 1/1H/1480:1482, 1/1H/1605:1608 | No text annotation Not in a motif group | homologous IL_7A0S_052 IL_73028.1 | |
IL_6QNR_286 | 1/1H/1484:1487, 1/1H/1599:1603 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
IL_6QNR_287 | 1/1H/1496:1498, 1/1H/1510:1511 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.4 | |
IL_6QNR_288 | 1/1H/1499:1500, 1/1H/1507:1509 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.6 | |
IL_6QNR_289 | 1/1H/1517:1521, 1/1H/1567:1570 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
IL_6QNR_290 | 1/1H/1529:1530, 1/1H/1553:1559 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
IL_6QNR_291 | 1/1H/1536:1538, 1/1H/1546:1547 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.6 | |
IL_6QNR_292 | 1/1H/1573:1577, 1/1H/1588:1594 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
IL_6QNR_293 | 1/1H/1699:1704, 1/1H/2027:2029 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
IL_6QNR_294 | 1/1H/1711:1713, 1/1H/2018:2020 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
IL_6QNR_295 | 1/1H/1714:1717, 1/1H/2016:2017 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
IL_6QNR_296 | 1/1H/1717:1722, 1/1H/2013:2016 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_76273.1 | |
IL_6QNR_297 | 1/1H/1734:1739, 1/1H/1744:1750 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
IL_6QNR_298 | 1/1H/1802:1803, 1/1H/2003:2005 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.6 | |
IL_6QNR_299 | 1/1H/1830:1836, 1/1H/1845:1853 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
IL_6QNR_300 | 1/1H/1869:1872, 1/1H/1925:1926 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.3 | |
IL_6QNR_301 | 1/1H/1873:1874, 1/1H/1921:1924 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
IL_6QNR_302 | 1/1H/1878:1881, 1/1H/1916:1917 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.3 | |
IL_6QNR_303 | 1/1H/1883:1887, 1/1H/1910:1914 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
IL_6QNR_304 | 1/1H/1888:1892, 1/1H/1905:1909 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
IL_6QNR_305 | 1/1H/1956:1957, 1/1H/1987:1990 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
IL_6QNR_306 | 1/1H/1957:1968, 1/1H/1984:1987 | No text annotation Not in a motif group | homologous IL_7RQB_077 NA | |
IL_6QNR_307 | 1/1H/2073:2075, 1/1H/2630:2631 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.3 | |
IL_6QNR_308 | 1/1H/2077:2080, 1/1H/2624:2628 | No text annotation Not in a motif group | ||
IL_6QNR_309 | 1/1H/2090:2092, 1/1H/2455:2456 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.16 | |
IL_6QNR_310 | 1/1H/2093:2094, 1/1H/2451:2454 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.4 | |
IL_6QNR_311 | 1/1H/2104:2106, 1/1H/2249:2252 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
IL_6QNR_312 | 1/1H/2108:2110, 1/1H/2245:2247 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_86319.2 | |
IL_6QNR_313 | 1/1H/2131:2133, 1/1H/2202:2204 | No text annotation Not in a motif group | geometric IL_3RG5_002 IL_86319.2 | |
IL_6QNR_314 | 1/1H/2133:2143, 1/1H/2201:2202 | No text annotation Not in a motif group | ||
IL_6QNR_315 | 1/1H/2310:2312, 1/1H/2330:2334 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 IL_38958.7 | |
IL_6QNR_316 | 1/1H/2363:2366, 1/1H/2377:2380 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.10 | |
IL_6QNR_317 | 1/1H/2414:2416, 1/1H/2427:2428 | No text annotation Not in a motif group | ||
IL_6QNR_318 | 1/1H/2466:2467, 1/1H/2511:2513 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.4 | |
IL_6QNR_319 | 1/1H/2467:2468, 1/1H/2509:2511 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.3 | |
IL_6QNR_320 | 1/1H/2470:2472, 1/1H/2506:2507 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.3 | |
IL_6QNR_321 | 1/1H/2472:2474, 1/1H/2502:2506 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
IL_6QNR_322 | 1/1H/2479:2483, 1/1H/2493:2497 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
IL_6QNR_323 | 1/1H/2520:2521, 1/1H/2593:2595 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
IL_6QNR_324 | 1/1H/2523:2525, 1/1H/2587:2591 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
IL_6QNR_325 | 1/1H/2525:2526, 1/1H/2584:2587 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
IL_6QNR_326 | 1/1H/2535:2536, 1/1H/2553:2556 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
IL_6QNR_327 | 1/1H/2601:2603, 1/1H/2617:2619 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
IL_6QNR_328 | 1/1H/2604:2605, 1/1H/2614:2616 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.6 | |
IL_6QNR_329 | 1/1H/2649:2653, 1/1H/2788:2796 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
IL_6QNR_330 | 1/1H/2665:2671, 1/1H/2676:2681 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
IL_6QNR_331 | 1/1H/2693:2697, 1/1H/2739:2741 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
IL_6QNR_332 | 1/1H/2700:2704, 1/1H/2732:2736 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
IL_6QNR_333 | 1/1H/2708:2709, 1/1H/2724:2728 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
IL_6QNR_334 | 1/1H/2751:2756, 1/1H/2776:2781 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
IL_6QNR_335 | 1/1H/2849:2850, 1/1H/2889:2891 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
IL_6QNR_336 | 1/1H/2854:2857, 1/1H/2881:2885 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
IL_6QNR_337 | 1/1H/2858:2863, 1/1H/2876:2880 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
IL_6QNR_338 | 1/1J/17:18, 1/1J/65:67 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.6 | |
IL_6QNR_339 | 1/1J/23:28, 1/1J/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
IL_6QNR_340 | 1/1J/30:32, 1/1J/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
IL_6QNR_341 | 1/1J/33:38, 1/1J/44:49 | No text annotation Not in a motif group | geometric IL_7A0S_105 IL_93630.2 | |
IL_6QNR_342 | 1/1J/71:79, 1/1J/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_6QNR_091 | No text annotation | ||
IL_6QNR_092 | No text annotation | ||
IL_6QNR_100 | No text annotation | ||
IL_6QNR_101 | No text annotation | ||
IL_6QNR_142 | No text annotation | ||
IL_6QNR_241 | No text annotation | ||
IL_6QNR_262 | No text annotation | ||
IL_6QNR_269 | No text annotation | ||
IL_6QNR_272 | No text annotation | ||
IL_6QNR_273 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_6QNR_001 | 1/13/46:47, 1/13/361:367, 1/13/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
J3_6QNR_002 | 1/13/586:588, 1/13/651:654, 1/13/754:755 | No text annotation Not in a motif group | ||
J3_6QNR_003 | 1/13/672:673, 1/13/717:725, 1/13/732:734 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
J3_6QNR_004 | 1/13/826:829, 1/13/857:861, 1/13/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
J3_6QNR_005 | 1/13/936:939, 1/13/1344:1350, 1/13/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
J3_6QNR_006 | 1/13/943:946, 1/13/1235:1237, 1/13/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
J3_6QNR_007 | 1/13/955:962, 1/13/973:984, 1/13/1221:1225 | No text annotation Not in a motif group | ||
J3_6QNR_008 | 1/13/990:993, 1/13/1045:1047, 1/13/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
J3_6QNR_009 | 1/13/1003:1007, 1/13/1022:1028A, 1/13/1032B:1037 | No text annotation Not in a motif group | ||
J3_6QNR_010 | 1/13/1063:1068, 1/13/1107:1113, 1/13/1187:1193 | No text annotation Not in a motif group | ||
J3_6QNR_011 | 1/13/1073:1074, 1/13/1083:1087, 1/13/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
J3_6QNR_012 | 1/13/1116:1118, 1/13/1155:1158, 1/13/1181:1184 | No text annotation Not in a motif group | homologous J3_4LFB_008 NA | |
J3_6QNR_013 | 1/13/1237:1241, 1/13/1296:1303, 1/13/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
J3_6QNR_014 | 1/14/30:31, 1/14/474:481, 1/14/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
J3_6QNR_015 | 1/14/56:57, 1/14/70:76, 1/14/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
J3_6QNR_016 | 1/14/269:270C, 1/14/270W:271, 1/14/366:370 | No text annotation Not in a motif group | ||
J3_6QNR_017 | 1/14/683:689, 1/14/773:775, 1/14/791:794 | No text annotation Not in a motif group | homologous J3_7A0S_004 NA | |
J3_6QNR_018 | 1/14/698:700, 1/14/732:736, 1/14/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
J3_6QNR_019 | 1/14/1298:1303, 1/14/1625:1627, 1/14/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
J3_6QNR_020 | 1/14/1306:1309, 1/14/1605:1611, 1/14/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
J3_6QNR_021 | 1/14/1344:1350, 1/14/1381:1385, 1/14/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
J3_6QNR_022 | 1/14/2091:2093, 1/14/2196:2205, 1/14/2219:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
J3_6QNR_023 | 1/14/2295:2297, 1/14/2321:2323, 1/14/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
J3_6QNR_024 | 1/14/2517:2520, 1/14/2545:2547, 1/14/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
J3_6QNR_025 | 1/14/2789:2792, 1/14/2804:2811, 1/14/2889:2894 | No text annotation Not in a motif group | ||
J3_6QNR_026 | 1/14/2814:2815, 1/14/2831:2836, 1/14/2882:2886 | No text annotation Not in a motif group | ||
J3_6QNR_027 | 1/16/11:16, 1/16/68:70, 1/16/106:109 | No text annotation Not in a motif group | ||
J3_6QNR_028 | 1/1G/46:47, 1/1G/361:367, 1/1G/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
J3_6QNR_029 | 1/1G/586:588, 1/1G/651:654, 1/1G/754:755 | No text annotation Not in a motif group | ||
J3_6QNR_030 | 1/1G/672:673, 1/1G/717:725, 1/1G/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
J3_6QNR_031 | 1/1G/826:829, 1/1G/857:861, 1/1G/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
J3_6QNR_032 | 1/1G/943:946, 1/1G/1235:1237, 1/1G/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
J3_6QNR_033 | 1/1G/955:962, 1/1G/973:985, 1/1G/1220:1225 | No text annotation Not in a motif group | ||
J3_6QNR_034 | 1/1G/990:993, 1/1G/1045:1047, 1/1G/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
J3_6QNR_035 | 1/1G/1000:1006, 1/1G/1023:1028A, 1/1G/1032B:1040 | No text annotation Not in a motif group | ||
J3_6QNR_036 | 1/1G/1063:1068, 1/1G/1107:1113, 1/1G/1187:1193 | No text annotation Not in a motif group | ||
J3_6QNR_037 | 1/1G/1073:1074, 1/1G/1083:1087, 1/1G/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
J3_6QNR_038 | 1/1G/1116:1118, 1/1G/1155:1161, 1/1G/1175:1184 | No text annotation Not in a motif group | ||
J3_6QNR_039 | 1/1G/1237:1241, 1/1G/1296:1303, 1/1G/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
J3_6QNR_040 | 1/1H/30:31, 1/1H/501:508, 1/1H/535:536 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
J3_6QNR_041 | 1/1H/55:56, 1/1H/69:75, 1/1H/108:112 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
J3_6QNR_042 | 1/1H/259:263, 1/1H/283:290, 1/1H/397:398 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
J3_6QNR_043 | 1/1H/731:737, 1/1H/821:823, 1/1H/839:842 | No text annotation Not in a motif group | homologous J3_7A0S_004 NA | |
J3_6QNR_044 | 1/1H/746:748, 1/1H/780:784, 1/1H/808:811 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
J3_6QNR_045 | 1/1H/1345:1350, 1/1H/1672:1674, 1/1H/1687:1690 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
J3_6QNR_046 | 1/1H/1353:1356, 1/1H/1652:1658, 1/1H/1667:1669 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
J3_6QNR_047 | 1/1H/1391:1397, 1/1H/1428:1432, 1/1H/1449:1450 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
J3_6QNR_048 | 1/1H/2114:2116, 1/1H/2219:2223, 1/1H/2236:2241 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
J3_6QNR_049 | 1/1H/2308:2310, 1/1H/2334:2336, 1/1H/2345:2350 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
J3_6QNR_050 | 1/1H/2530:2533, 1/1H/2558:2560, 1/1H/2574:2580 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
J3_6QNR_051 | 1/1H/2825:2826, 1/1H/2842:2847, 1/1H/2893:2897 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
J3_6QNR_052 | 1/1J/11:16, 1/1J/68:69, 1/1J/107:109 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA |
Problematic loops
No problematic loops
Coloring options: