6XII Summary
- Structure Title
- 6XII Summary
- Authors
- Release Date
- 2020-09-02
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 7.0 Å
- Chains
-
- 6 RNA chains from synthetic construct, Escherichia coli
- 61 other chains
- Compounds
- 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, NT DNA, T DNA, mRNA with 24 nt long spacer, 50S ribosomal protein L10, E-site and P-site tRNA (fMet), DNA-directed RNA polymerase subunit beta, Transcription termination/antitermination protein NusG, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit omega, E-site and P-site tRNA (fMet), 30S ribosomal protein S18, 16S rRNA, 30S ribosomal protein S20, 30S ribosomal protein S21, 30S ribosomal protein S2, 30S ribosomal protein S1, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S14, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S19, 30S ribosomal protein S13, 50S ribosomal protein L11, 50S ribosomal protein L7/L12, 23S rRNA, 50S ribosomal protein L27, 50S ribosomal protein L28, 5S rRNA, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L2, 50S ribosomal protein L32, 50S ribosomal protein L3, 50S ribosomal protein L33, 50S ribosomal protein L4, 50S ribosomal protein L34, 50S ribosomal protein L5, 50S ribosomal protein L35, 50S ribosomal protein L6, 50S ribosomal protein L36, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20
Pairwise Interactions
Interactions annotated by FR3D:- 2,034 base-pairs
- 4,937 base-stacking
- 2,044 base-phosphate
- 294 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 6XII contains:- 185 internal loops from 0 motif groups
- 108 hairpin loops from 0 motif groups
- 26 three-way junctions
3D Redundancy
6XII has chains which belong to the following equivalence classes in the current representative set:- NR_all_35542.134 (2)
- NR_all_10157.137 (1)
- NR_all_56726.125 (1)
- NR_all_83717.139 (1)
- NR_20.0_35542.134 (2)
- NR_20.0_10157.137 (1)
- NR_20.0_56726.125 (1)
- NR_20.0_83717.139 (1)
Similar structures
5L4O 5HCQ 8G2C 8G2A 8UD7 4V6G 8G29 8G2A 8G29 8G2C 4WQ1 5IBB 8EKB 6CAE 8UD7 7U2J 8G2B 8UD8 8UD6 4WQR 5HCQ 8EKB 8UD8 4V5F 7OSA 7U2H 8G2B 5IB7 4V8D 7RQ8 5HCR 4Z8C 5J4B 7U2J 4WQ1 6XHY 5EL7 4WSD 8UD6 8EV7 4V8D 5IBB 6XHY 5J4B 4Z8C 4WSD 6CAE 4WT1 4WQR 5J4C 4WPO 5W4K 1VY4 6OF1 4V6G 5DFE 6QNQ 6XHW 4W2H 7RQ8 5HCR 5EL7 5HD1 4LNT 5HCP 6OF1 8CVK 5HAU 5J4C 7U2I 4W2I 6XHV 5WIS 5IB7 5EL6 4WT1 5IB8 4W2G 6XQD 6ND5 4LNT 4W2H 4V7M 5W4K 8EV7 4YZV 8CVK 7U2H 4V5F 8G2D 5DFE 4WRA 6XHW 4WRA 5EL6 5HAU 5E7K 6XQD 6XHV 5IB8 4V9S 4Y4P 4W2G 4WR6 6O97 8CVJ 4WR6 3CW5 5EL4 5HCP 5DOY 4ZER 5WIT 4W4G 5EL5 5VP2 6QNQ 8EV6 5HD1 4W2I 4V9S 6ND5 8CVJ 8CVL 5E7K 7RQ9 1VY7 4Z3S 8G2D 1VY4 4W2F 1VY5 4YZV 4WPO 4V51 4V8Q 7JQL 7U2I 8CVL 4ZSN 7JQM 4YPB 7JQL 4W4G 4V9R 4WZO 7RQ9 5EL4 4V9R 4W2F 5WIS 4WRO 4V8E 4V51 6ND6 4V5C 6O97 4Y4P 7JQM 1VY6 4Z3S 4ZER 6UO1 6UO1 5VP2 4ZSN 1VY6 8EV6 4WQY 5DOY 4WRO 5WIT 4V8F 5F8K 4V5C 4V87 7OSM 4WZO 4TUC 6ND6 1VY5 4YPB 4V8B 4P6F 4LT8 4V87 4V8C 4TUC 5EL5 4V7M 4V5F 4V8E 4V5F 4TUA 6XQE 7LH5 4V9I 7LH5 4TUA 6GSK 4V67 6XQE 4TUB 4V7L 6N9E 4V7P 4V8B 4TUB 4V7L 4TUD 4LT8 4P6F 6N9E 4P70 4V8C 6N9F 4V5K 5F8K 4V7P 4V67 4P70 4TUD 1VVJ 6QNQ 4WQY 1VY7 6N9F 5CZP 6GSK 5CZP 4V9I 4V8F 4LSK 4V6G 4V63 4LFZ 4LSK 4V63 1VVJ 4LFZ 3CW6 3QSY 4L71 6QNQ 5D8B 6B4V 4V97 4LEL 4V6G 4V8C 4WZO 4L71 6B4V 5D8B 6B4V 4V5K 6B4V 4LEL 4V8C 4V97 4V8B 4V87 7CHD 6QNQ 7CHD 4W4G 4W4G 4V87 4V63 4V8B 4V67 4V63 5D8B 4V8J 4V6G 4V8O 5D8B 4V8J 4V67 4V5K 4V5K 3V11 4YPB 4YPB 4V5A 4V4Z 4V5A 4V8Q 4V4X 6GSJ 5J4D 6GSJ 5J4D 4V6A 4V6A 5J4D 5J4D 6GSL 6GSL 6BOH 6BOH 6BOH 6BOH 8B0X 8FTO 8CCS 8AYE 7K00 8P2G 8CDR 8CEH 8G6W 8BIL 8EMM 8EMM 6XZ7 8G6Y 8BIM 8BGE 8CGN 8CGN 8EIU 8EIU 8BF7 8BHL 7TOP 8P2F 7Y7G 8P2F 8G6X 8CIV 9FBV 8P2H 7Y7E 8BHP 8IFB 7Y7F 7SA4 7SA4 8CG8 7Y7H 7Y7C 6XZB 8BH4 7UG7 7Y7D 7TOO 7UNW 7MT7 7MT7 8CF5 8CDL 8G5Z 7MT2 6XZA 8P16 8P18 9BDL 7MT3 9BDL 8P17 8CVM 7UNV 8EKC 7NWT 6AZ1 8BHJ 8BGH 8CRX 7TOR 7ST2 8G7R 8AM9 6Y69 7M5D 7TOR 5AFI 5AFI 6WDE 7ST6 6H4N 6WD0 6WDE 6WD0 7ST6 7UNU 8G7P 8SYL 7UNR 8IFC 8B7Y 5H5U 8G61 5J3C 5WFS 5WDT 5WDT 5WFS 6OPE 6OPE 7TOQ 9BDN 9BDN 6ORE 8CKU 5J3C 6OTR 6OTR 6OTR 6X7K 8URY 8URY 6X7K 6ORD 5MDV 6OTR 6ORD 6BZ6 6ZTP 6ZU1 6ZTO 5WE4 7PJV 7PJY 5WE4 7NBU 5U9G 7K53 6WNW 5UYM 5U9F 7ST7 7K54 6WDD 5UQ8 5U9G 5U9F 5UYM 7LV0 7SSN 7K53 7SSO 8G7Q 5MDW 6BZ6 8UQL 6X6T 8UQL 6X6T 6OJ2 6OF6 6WDD 6C4I 6C4I 6OXA 6OXA 8BHN 5J30 5J30 6OF6 6OJ2 5MDZ 7JT1 7K55 7SSD 8AP4 6OXA 6WD1 6YEF 6OFX 6WDG 6OXA 7K50 7K52 5ZEB 7K50 5ZEP 6WDF 6OG7 8A3L 8UR0 8UR0 6OGI 5LZD 5WE6 5WFK 5WFK 5WE6 5MDY 6BU8 7JT2 6BU8 5U4I 5UQ7 7K51 5U4I 8A3L 6X7F 6X7F 6OXI 6OXI 6BUW 6WDK 6WDK 6WDM 6WD3 5UYL 6WD2 6WDM 5UYL 6WD5 6ZTJ 6ZTM 6WD5 6BUW 6WD3 5LZA 5WF0 5WF0 7JSZ 6WDJ 6WD6 6WDL 7JSS 6WD8 6WDL 6WD8 6WDJ 9BDP 6WD9 6WD4 6WD4 9BDP 5ZEU 6WD2 7JT3 6VYS 6VYQ 6XDQ 6VU3 6VYS 6VYQ 6XDQ 6VU3 6WD9 6DNC 6DNC 6WD6 6OSQ 8R6C 6OSK 8PHJ 6SWC 7ZKI 5L3P 3JCJ 6BZ7 8PHJ 6Q95 6WDA 7JSW 5UYQ 6GXM 5UYQ 6GWT 6WDA 7SSW 7SSL 6BZ8 6BZ8 6ORL 8UQP 6VYR 8UQP 6VYR 6NDK 6BZ7 5KPW 5KPS 5UYK 5UYP 6GXN 6WD7 5UYK 5UYP 8VS9 7SS9 6GXO 6NDK 5KPX 6WD7 5KPS 6OGF 3J9Y 5UYN 5UYN 6WDI 6WDB 6WDI 6O9K 5IQR 6BZ7 6WDB 5KPW 6OUO 6BZ8 6BZ7 7PJW 5KPV 6BZ8 5KPX 6VZJ 6VZJ 6ZTL 6WDC 6O7K 6WDC 6ZTN 6OGG 6OT3 6WDH 6WDH 5KPV 6OST 8PVA 5LMU 5LZF 3JCN 3JBN 6XDR 6XDR 6X9Q 6X9Q 5U4J 5LZC 6XGF 6XGF 8UQM 8UPR 8URI 8UPR 8UQM 8URI 5LZB 8FIZ 8UPO 8UPO 8URH 8URH 5LMV 3JBO 5LMQ 7PJZ 7PJT 3J77 3J78 3J78 5LMS 6SW9 5JBH 5JB3 7PJX 8URX 8URX 4V69 6VZ7 6VYW 6VYU 6VYW 6VYU 6VZ7 4V7B 3J5S 6H58 6H58 6XIJ 6XIJ 6VZ5 6VZ3 6VZ5 6VZ3 7PJU 4V6V 6VYY 6VYX 6VYZ 6VYY 6VYX 6VYZ 6VZ2 6VZ2 4V6T 3DEG 4V6R 4V6Q 1EG0 4V6Y 4V6Z 4V75 4V6N 5ZEY 4V72 4V6S 4V6P 6VYT 6VYT 5ME1 4V6O 4V79 4V73 5ME0 4V70 4V74 4V77 4V76 4V71 4V78Structures from NR_all_35542.134