RNA 3D Hub //

7OHX Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OHX_0051/1/194:201No text annotation
Not in a motif group		homologous
HL_8C3A_005
HL_89380.2
HL_7OHX_0061/1/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_7OHX_0071/1/216:224No text annotation
Not in a motif group		homologous
HL_8C3A_007
HL_08002.9
HL_7OHX_0141/1/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.2
HL_7OHX_0331/1/3194:3197No text annotation
Not in a motif group		geometric
HL_5TBW_068
HL_98426.1
HL_7OHX_0401/6/11:17No text annotation
Not in a motif group		geometric
HL_5AH5_007
HL_38927.2
HL_7OHX_0411/6/37:42No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_7OHX_001No text annotation
HL_7OHX_002No text annotation
HL_7OHX_003Other HL
HL_7OHX_004No text annotation
HL_7OHX_008No text annotation
HL_7OHX_009No text annotation
HL_7OHX_010No text annotation
HL_7OHX_011GNRA
HL_7OHX_012No text annotation
HL_7OHX_013No text annotation
HL_7OHX_015No text annotation
HL_7OHX_016No text annotation
HL_7OHX_017GNRA
HL_7OHX_018No text annotation
HL_7OHX_019No text annotation
HL_7OHX_020No text annotation
HL_7OHX_021No text annotation
HL_7OHX_022No text annotation
HL_7OHX_023No text annotation
HL_7OHX_024No text annotation
HL_7OHX_025No text annotation
HL_7OHX_026No text annotation
HL_7OHX_027No text annotation
HL_7OHX_028No text annotation
HL_7OHX_029No text annotation
HL_7OHX_030No text annotation
HL_7OHX_031No text annotation
HL_7OHX_032No text annotation
HL_7OHX_034No text annotation
HL_7OHX_035No text annotation
HL_7OHX_036No text annotation
HL_7OHX_037No text annotation
HL_7OHX_038No text annotation
HL_7OHX_039No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OHX_0091/1/337:339,
1/2/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_37497.3
IL_7OHX_0101/1/376:379,
1/1/390:403		No text annotation
Not in a motif group		homologous
IL_5TBW_014
IL_60992.6
IL_7OHX_0111/1/404:410,
1/2/13:19		No text annotation
Not in a motif group		homologous
IL_8C3A_016
IL_66414.6
IL_7OHX_0151/1/512:513,
1/1/577:579		No text annotation
Not in a motif group		homologous
IL_8C3A_020
IL_37497.3
IL_7OHX_0161/1/517:525,
1/1/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_7OHX_0171/1/531:538,
1/1/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_07703.1
IL_7OHX_0191/1/680:684,
1/1/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_7OHX_0241/1/969:970,
1/1/1111:1113		No text annotation
Not in a motif group		homologous
IL_8C3A_038
IL_76488.2
IL_7OHX_0251/1/972:974,
1/1/1107:1109		No text annotation
Not in a motif group		geometric
IL_4YHW_001
IL_95997.1
IL_7OHX_0271/1/983:985,
1/1/1099:1100		No text annotation
Not in a motif group		homologous
IL_8C3A_040
IL_00225.3
IL_7OHX_0281/1/986:987,
1/1/1062:1098		No text annotation
Not in a motif group
IL_7OHX_0291/1/1120:1125,
1/1/1133:1138		No text annotation
Not in a motif group
IL_7OHX_0301/1/1167:1171,
1/1/1328:1332		No text annotation
Not in a motif group		homologous
IL_8C3A_051
IL_89002.2
IL_7OHX_0311/1/1173:1180,
1/1/1325:1326		SSU/LSU pseudoknot
Not in a motif group		homologous
IL_5TBW_049
IL_15861.7
IL_7OHX_0321/1/1180:1182,
1/1/1324:1325		Single bulged U
Not in a motif group		geometric
IL_5TBW_050
IL_83039.14
IL_7OHX_0361/1/1376:1378,
1/1/1428:1431		No text annotation
Not in a motif group		homologous
IL_8C3A_061
IL_52767.2
IL_7OHX_0371/1/1385:1387,
1/1/1420:1421		No text annotation
Not in a motif group		homologous
IL_8C3A_062
IL_37497.3
IL_7OHX_0491/1/3177:3179,
1/1/3210:3211		Single bulged A
Not in a motif group		homologous
IL_5TBW_123
IL_37497.3
IL_7OHX_0501/1/3179:3188,
1/1/3204:3210		No text annotation
Not in a motif group		geometric
IL_5TBW_124
IL_15174.1
IL_7OHX_0511/1/3193:3194,
1/1/3197:3199		Single bulged U
Not in a motif group		homologous
IL_5TBW_125
IL_83039.14
IL_7OHX_0621/6/26:27,
1/6/51:54		Multiple bulged bases
Not in a motif group		geometric
IL_4V88_392
IL_44546.1
IL_7OHX_0631/6/30:34,
1/6/45:48		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_7OHX_001No text annotation
IL_7OHX_002No text annotation
IL_7OHX_003No text annotation
IL_7OHX_004No text annotation
IL_7OHX_005No text annotation
IL_7OHX_006No text annotation
IL_7OHX_007No text annotation
IL_7OHX_008No text annotation
IL_7OHX_012No text annotation
IL_7OHX_013No text annotation
IL_7OHX_014No text annotation
IL_7OHX_018No text annotation
IL_7OHX_020No text annotation
IL_7OHX_021No text annotation
IL_7OHX_022UU cWW
IL_7OHX_023No text annotation
IL_7OHX_026No text annotation
IL_7OHX_033No text annotation
IL_7OHX_034No text annotation
IL_7OHX_035No text annotation
IL_7OHX_038Kink-turn
IL_7OHX_039Single bulged A
IL_7OHX_040No text annotation
IL_7OHX_041No text annotation
IL_7OHX_0428x7 Sarcin-Ricin; G-bulge
IL_7OHX_043No text annotation
IL_7OHX_044No text annotation
IL_7OHX_045No text annotation
IL_7OHX_046No text annotation
IL_7OHX_047No text annotation
IL_7OHX_048Isolated cWS basepair
IL_7OHX_052No text annotation
IL_7OHX_053No text annotation
IL_7OHX_054Tandem non-canonical cWW pairs
IL_7OHX_055No text annotation
IL_7OHX_056No text annotation
IL_7OHX_057No text annotation
IL_7OHX_058No text annotation
IL_7OHX_059No text annotation
IL_7OHX_060Isolated non-canonical cWW with bulges
IL_7OHX_061Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OHX_0031/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA

Problematic loops

#loop idProblemSequence
J3_7OHX_001No text annotation
J3_7OHX_002No text annotation
J3_7OHX_004No text annotation
J3_7OHX_005No text annotation
J3_7OHX_006No text annotation

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