8G2B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8G2B_001 | 1/1A/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_8G2B_002 | 1/1A/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_8G2B_003 | 1/1A/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_8G2B_004 | 1/1A/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_8G2B_005 | 1/1A/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_8G2B_006 | 1/1A/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_8G2B_007 | 1/1A/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_8G2B_008 | 1/1A/271I:271O | No text annotation | homologous HL_8VTW_008 NA | |
| HL_8G2B_009 | 1/1A/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_8G2B_010 | 1/1A/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_8G2B_011 | 1/1A/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_8G2B_012 | 1/1A/382:392 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_8G2B_013 | 1/1A/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_8G2B_014 | 1/1A/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_8G2B_015 | 1/1A/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_8G2B_017 | 1/1A/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_8G2B_018 | 1/1A/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_8G2B_019 | 1/1A/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_8G2B_020 | 1/1A/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_8G2B_022 | 1/1A/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_8G2B_023 | 1/1A/744:753 | No text annotation | homologous HL_8VTW_022 NA | |
| HL_8G2B_024 | 1/1A/779:785 | No text annotation | homologous HL_4WF9_024 HL_87954.2 | |
| HL_8G2B_025 | 1/1A/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_8G2B_026 | 1/1A/882:894 | No text annotation | ||
| HL_8G2B_027 | 1/1A/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_8G2B_028 | 1/1A/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_8G2B_029 | 1/1A/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_8G2B_031 | 1/1A/1171:1178 | No text annotation | homologous HL_7RQB_031 NA | |
| HL_8G2B_032 | 1/1A/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_8G2B_033 | 1/1A/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_8G2B_034 | 1/1A/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_8G2B_035 | 1/1A/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_8G2B_036 | 1/1A/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_8G2B_037 | 1/1A/1451:1459 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_8G2B_038 | 1/1A/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_8G2B_039 | 1/1A/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_8G2B_040 | 1/1A/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_8G2B_041 | 1/1A/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_8G2B_042 | 1/1A/1691:1696 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_8G2B_043 | 1/1A/1720:1742 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_8G2B_044 | 1/1A/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_8G2B_045 | 1/1A/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_8G2B_046 | 1/1A/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_8G2B_047 | 1/1A/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_8G2B_224 | 1/1A/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_8G2B_049 | 1/1A/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_8G2B_050 | 1/1A/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_8G2B_052 | 1/1A/2205:2219 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_8G2B_053 | 1/1A/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_8G2B_054 | 1/1A/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_8G2B_236 | 1/1A/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_8G2B_056 | 1/1A/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_8G2B_057 | 1/1A/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_8G2B_058 | 1/1A/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_8G2B_059 | 1/1A/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_8G2B_060 | 1/1A/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_8G2B_061 | 1/1A/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_8G2B_062 | 1/1A/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_8G2B_063 | 1/1A/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_8G2B_064 | 1/1A/2658:2663 | GNRA | geometric HL_7RQB_064 NA | |
| HL_8G2B_065 | 1/1A/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_8G2B_066 | 1/1A/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_8G2B_068 | 1/1A/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_8G2B_069 | 1/1A/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_8G2B_225 | 1/1B/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_8G2B_070 | 1/1B/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_8G2B_071 | 1/1B/86:91 | GNRA | homologous HL_7RQB_071 NA | |
| HL_8G2B_072 | 1/1a/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_8G2B_074 | 1/1a/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_8G2B_075 | 1/1a/189C:189H | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_8G2B_077 | 1/1a/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_8G2B_078 | 1/1a/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_8G2B_079 | 1/1a/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_8G2B_080 | 1/1a/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_8G2B_081 | 1/1a/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_8G2B_082 | 1/1a/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_8G2B_083 | 1/1a/458:473 | GNRA | homologous HL_6CZR_083 NA | |
| HL_8G2B_226 | 1/1a/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.7 | |
| HL_8G2B_085 | 1/1a/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_8G2B_086 | 1/1a/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_8G2B_087 | 1/1a/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_8G2B_088 | 1/1a/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_8G2B_089 | 1/1a/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_8G2B_090 | 1/1a/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_8G2B_091 | 1/1a/897:902 | GNRA | homologous HL_5J7L_020 HL_37824.7 | |
| HL_8G2B_092 | 1/1a/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_8G2B_093 | 1/1a/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_8G2B_095 | 1/1a/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_8G2B_096 | 1/1a/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_8G2B_097 | 1/1a/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_8G2B_098 | 1/1a/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_8G2B_099 | 1/1a/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_8G2B_100 | 1/1a/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_8G2B_101 | 1/1a/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_8G2B_102 | 1/1a/1445:1457 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_8G2B_103 | 1/1a/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_8G2B_228 | 1/1w/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_8G2B_106 | 1/1w/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1H3E_004 HL_28252.6 | |
| HL_8G2B_107 | 1/1x/13:22 | tRNA D-loop | homologous HL_6CFJ_106 HL_93616.2 | |
| HL_8G2B_108 | 1/1x/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.5 | |
| HL_8G2B_109 | 1/1x/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.6 | |
| HL_8G2B_229 | 1/1y/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_8G2B_112 | 1/1y/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QF6_003 HL_28252.6 | |
| HL_8G2B_113 | 1/2A/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_8G2B_114 | 1/2A/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_8G2B_115 | 1/2A/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_8G2B_116 | 1/2A/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_8G2B_118 | 1/2A/194:201 | No text annotation | geometric HL_5J7L_139 HL_30068.2 | |
| HL_8G2B_119 | 1/2A/225:230 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_8G2B_120 | 1/2A/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_8G2B_121 | 1/2A/271I:271O | No text annotation | geometric HL_5J7L_018 HL_37344.1 | |
| HL_8G2B_122 | 1/2A/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_8G2B_123 | 1/2A/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_8G2B_124 | 1/2A/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_8G2B_230 | 1/2A/383:391 | No text annotation | ||
| HL_8G2B_126 | 1/2A/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_8G2B_127 | 1/2A/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_8G2B_128 | 1/2A/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_8G2B_130 | 1/2A/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_8G2B_131 | 1/2A/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_8G2B_132 | 1/2A/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_8G2B_133 | 1/2A/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_8G2B_134 | 1/2A/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_8G2B_135 | 1/2A/744:753 | No text annotation | homologous HL_8VTW_022 NA | |
| HL_8G2B_136 | 1/2A/779:785 | No text annotation | homologous HL_4WF9_024 HL_87954.2 | |
| HL_8G2B_137 | 1/2A/826:831 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_8G2B_138 | 1/2A/881:895 | No text annotation | ||
| HL_8G2B_139 | 1/2A/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_8G2B_140 | 1/2A/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_8G2B_142 | 1/2A/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_8G2B_143 | 1/2A/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_8G2B_144 | 1/2A/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_8G2B_145 | 1/2A/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_8G2B_146 | 1/2A/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_8G2B_147 | 1/2A/1451:1459 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_8G2B_148 | 1/2A/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_8G2B_150 | 1/2A/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_8G2B_151 | 1/2A/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_8G2B_152 | 1/2A/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_8G2B_153 | 1/2A/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_8G2B_154 | 1/2A/1720:1742 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_8G2B_155 | 1/2A/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_8G2B_156 | 1/2A/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_8G2B_157 | 1/2A/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_8G2B_158 | 1/2A/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_8G2B_231 | 1/2A/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_8G2B_160 | 1/2A/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_8G2B_161 | 1/2A/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_8G2B_163 | 1/2A/2205:2219 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_8G2B_164 | 1/2A/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_8G2B_165 | 1/2A/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_8G2B_237 | 1/2A/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_8G2B_167 | 1/2A/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_8G2B_168 | 1/2A/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_8G2B_169 | 1/2A/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_8G2B_170 | 1/2A/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_8G2B_171 | 1/2A/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_8G2B_172 | 1/2A/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_8G2B_173 | 1/2A/2551:2557 | No text annotation | homologous HL_7RQB_062 NA | |
| HL_8G2B_174 | 1/2A/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_8G2B_175 | 1/2A/2658:2663 | GNRA | geometric HL_2OIU_001 HL_37824.7 | |
| HL_8G2B_176 | 1/2A/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_8G2B_177 | 1/2A/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_8G2B_179 | 1/2A/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_8G2B_180 | 1/2A/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_8G2B_232 | 1/2B/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_8G2B_181 | 1/2B/38:44 | No text annotation | geometric HL_5J7L_203 HL_47787.2 | |
| HL_8G2B_182 | 1/2B/86:91 | GNRA | homologous HL_7RQB_071 NA | |
| HL_8G2B_183 | 1/2a/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_8G2B_185 | 1/2a/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_8G2B_186 | 1/2a/189C:189H | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_8G2B_187 | 1/2a/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_8G2B_188 | 1/2a/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_8G2B_189 | 1/2a/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_8G2B_190 | 1/2a/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_8G2B_191 | 1/2a/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_8G2B_192 | 1/2a/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_8G2B_193 | 1/2a/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_8G2B_194 | 1/2a/458:473 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_8G2B_233 | 1/2a/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.7 | |
| HL_8G2B_196 | 1/2a/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_8G2B_197 | 1/2a/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_8G2B_198 | 1/2a/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_8G2B_199 | 1/2a/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_8G2B_200 | 1/2a/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_8G2B_201 | 1/2a/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_8G2B_202 | 1/2a/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_8G2B_203 | 1/2a/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_8G2B_204 | 1/2a/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_8G2B_206 | 1/2a/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_8G2B_207 | 1/2a/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_8G2B_208 | 1/2a/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_8G2B_209 | 1/2a/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_8G2B_210 | 1/2a/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_8G2B_211 | 1/2a/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_8G2B_212 | 1/2a/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_8G2B_213 | 1/2a/1445:1457 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_8G2B_214 | 1/2a/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_8G2B_234 | 1/2w/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_8G2B_217 | 1/2w/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3KFU_006 HL_28252.6 | |
| HL_8G2B_218 | 1/2x/13:22 | tRNA D-loop | homologous HL_5E81_211 HL_93616.2 | |
| HL_8G2B_219 | 1/2x/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.5 | |
| HL_8G2B_220 | 1/2x/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5L4O_003 NA | |
| HL_8G2B_235 | 1/2y/31:39 | tRNA anticodon loop | homologous HL_1U0B_002 HL_06059.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8G2B_016 | No text annotation | ||
| HL_8G2B_021 | No text annotation | ||
| HL_8G2B_030 | No text annotation | ||
| HL_8G2B_048 | No text annotation | ||
| HL_8G2B_051 | UNCG | ||
| HL_8G2B_055 | No text annotation | ||
| HL_8G2B_067 | No text annotation | ||
| HL_8G2B_073 | No text annotation | ||
| HL_8G2B_076 | No text annotation | ||
| HL_8G2B_084 | No text annotation | ||
| HL_8G2B_227 | No text annotation | ||
| HL_8G2B_094 | No text annotation | ||
| HL_8G2B_104 | No text annotation | ||
| HL_8G2B_105 | No text annotation | ||
| HL_8G2B_110 | No text annotation | ||
| HL_8G2B_111 | No text annotation | ||
| HL_8G2B_117 | No text annotation | ||
| HL_8G2B_125 | No text annotation | ||
| HL_8G2B_129 | No text annotation | ||
| HL_8G2B_141 | No text annotation | ||
| HL_8G2B_149 | No text annotation | ||
| HL_8G2B_159 | No text annotation | ||
| HL_8G2B_162 | UNCG | ||
| HL_8G2B_166 | No text annotation | ||
| HL_8G2B_178 | No text annotation | ||
| HL_8G2B_184 | No text annotation | ||
| HL_8G2B_195 | No text annotation | ||
| HL_8G2B_205 | No text annotation | ||
| HL_8G2B_238 | No text annotation | ||
| HL_8G2B_215 | No text annotation | ||
| HL_8G2B_216 | No text annotation | ||
| HL_8G2B_221 | No text annotation | ||
| HL_8G2B_222 | No text annotation | ||
| HL_8G2B_223 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8G2B_001 | 1/1A/24:30, 1/1A/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_8G2B_002 | 1/1A/36:37, 1/1A/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_8G2B_003 | 1/1A/42:43, 1/1A/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_8G2B_004 | 1/1A/81:85, 1/1A/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_8G2B_005 | 1/1A/183:184, 1/1A/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_8G2B_006 | 1/1A/188:194, 1/1A/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_8G2B_007 | 1/1A/239:245, 1/1A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_8G2B_008 | 1/1A/272D:272E, 1/1A/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_8G2B_010 | 1/1A/280:284, 1/1A/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_8G2B_011 | 1/1A/288:290, 1/1A/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_8G2B_012 | 1/1A/293:295, 1/1A/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_8G2B_013 | 1/1A/481:484, 1/1A/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_8G2B_014 | 1/1A/564:566, 1/1A/575:577 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_8G2B_015 | 1/1A/606:610, 1/1A/618:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_8G2B_016 | 1/1A/672:674, 1/1A/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_8G2B_017 | 1/1A/674:678, 1/1A/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_8G2B_018 | 1/1A/697:698, 1/1A/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_8G2B_019 | 1/1A/702:703, 1/1A/728:730 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_8G2B_020 | 1/1A/703:707, 1/1A/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_8G2B_021 | 1/1A/738:741, 1/1A/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_8G2B_022 | 1/1A/775:777, 1/1A/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_8G2B_023 | 1/1A/837:838, 1/1A/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_8G2B_024 | 1/1A/844:846, 1/1A/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_8G2B_351 | 1/1A/844:850, 1/1A/927:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_8G2B_025 | 1/1A/846:850, 1/1A/927:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_8G2B_352 | 1/1A/858:862, 1/1A/915:919 | No text annotation | homologous IL_9DFE_026 IL_38862.4 | |
| IL_8G2B_027 | 1/1A/862:863, 1/1A/913:915 | Minor groove platform | geometric IL_4V9F_034 IL_51454.2 | |
| IL_8G2B_028 | 1/1A/864:868, 1/1A/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_8G2B_029 | 1/1A/870:872, 1/1A/905:907 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_8G2B_030 | 1/1A/875:877, 1/1A/899:902 | No text annotation | geometric IL_4V9F_053 IL_09990.4 | |
| IL_8G2B_031 | 1/1A/877:880, 1/1A/898:899 | No text annotation | ||
| IL_8G2B_353 | 1/1A/880:881, 1/1A/895:898 | No text annotation | ||
| IL_8G2B_033 | 1/1A/952:954, 1/1A/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_8G2B_034 | 1/1A/994:996, 1/1A/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_8G2B_035 | 1/1A/998:1002, 1/1A/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_8G2B_036 | 1/1A/1004:1011, 1/1A/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_8G2B_037 | 1/1A/1011:1013, 1/1A/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_8G2B_038 | 1/1A/1018:1024, 1/1A/1140:1144 | No text annotation | geometric IL_7RQB_039 NA | |
| IL_8G2B_039 | 1/1A/1024:1030, 1/1A/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_8G2B_040 | 1/1A/1031:1034, 1/1A/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_8G2B_041 | 1/1A/1043:1051, 1/1A/1108:1112 | Kink-turn | homologous IL_7RQB_042 NA | |
| IL_8G2B_043 | 1/1A/1087:1091, 1/1A/1100:1102 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_8G2B_044 | 1/1A/1196:1198, 1/1A/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_8G2B_045 | 1/1A/1202:1206, 1/1A/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_8G2B_046 | 1/1A/1208:1215, 1/1A/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_8G2B_047 | 1/1A/1219:1221, 1/1A/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_8G2B_048 | 1/1A/1262:1269, 1/1A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_8G2B_049 | 1/1A/1310:1313, 1/1A/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_8G2B_050 | 1/1A/1319:1323, 1/1A/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_8G2B_051 | 1/1A/1351:1355, 1/1A/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_8G2B_052 | 1/1A/1357:1361, 1/1A/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_8G2B_053 | 1/1A/1415:1416, 1/1A/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_8G2B_054 | 1/1A/1417:1421, 1/1A/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_8G2B_055 | 1/1A/1433:1435, 1/1A/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_8G2B_056 | 1/1A/1437:1440, 1/1A/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_8G2B_057 | 1/1A/1448:1450, 1/1A/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_8G2B_058 | 1/1A/1450A:1451, 1/1A/1459:1461 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_8G2B_059 | 1/1A/1469:1473, 1/1A/1518:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_8G2B_060 | 1/1A/1481:1482, 1/1A/1506:1510 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_8G2B_061 | 1/1A/1489:1491, 1/1A/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_8G2B_062 | 1/1A/1526:1529, 1/1A/1540:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_8G2B_063 | 1/1A/1651:1656, 1/1A/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_8G2B_064 | 1/1A/1663:1665, 1/1A/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_8G2B_065 | 1/1A/1666:1669, 1/1A/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_8G2B_354 | 1/1A/1666:1674, 1/1A/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_8G2B_066 | 1/1A/1669:1674, 1/1A/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_8G2B_067 | 1/1A/1686:1691, 1/1A/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_8G2B_068 | 1/1A/1770:1771, 1/1A/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_8G2B_069 | 1/1A/1798:1804, 1/1A/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_8G2B_070 | 1/1A/1837:1840, 1/1A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_8G2B_071 | 1/1A/1841:1842, 1/1A/1898:1901 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_8G2B_072 | 1/1A/1846:1849, 1/1A/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_8G2B_073 | 1/1A/1851:1855, 1/1A/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_8G2B_074 | 1/1A/1856:1860, 1/1A/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_8G2B_075 | 1/1A/1933:1934, 1/1A/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_8G2B_076 | 1/1A/1934:1945, 1/1A/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_8G2B_077 | 1/1A/2050:2052, 1/1A/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_8G2B_078 | 1/1A/2054:2057, 1/1A/2611:2615 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_8G2B_079 | 1/1A/2067:2069, 1/1A/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_8G2B_080 | 1/1A/2070:2071, 1/1A/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_8G2B_081 | 1/1A/2081:2083, 1/1A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_8G2B_082 | 1/1A/2085:2087, 1/1A/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_8G2B_083 | 1/1A/2108:2110, 1/1A/2179:2181 | Isolated non-canonical cWW pair | geometric IL_3GM7_004 IL_87907.2 | |
| IL_8G2B_085 | 1/1A/2124:2127, 1/1A/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_8G2B_367 | 1/1A/2129:2136, 1/1A/2155:2159 | Kink-turn | homologous IL_3U4M_004 IL_70923.9 | |
| IL_8G2B_087 | 1/1A/2297:2299, 1/1A/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_8G2B_088 | 1/1A/2350:2353, 1/1A/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_8G2B_089 | 1/1A/2401:2403, 1/1A/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_8G2B_090 | 1/1A/2453:2454, 1/1A/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_8G2B_091 | 1/1A/2454:2455, 1/1A/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_8G2B_092 | 1/1A/2457:2459, 1/1A/2493:2494 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_8G2B_093 | 1/1A/2459:2461, 1/1A/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_8G2B_094 | 1/1A/2466:2470, 1/1A/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_8G2B_095 | 1/1A/2507:2508, 1/1A/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_8G2B_096 | 1/1A/2510:2512, 1/1A/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_8G2B_097 | 1/1A/2512:2513, 1/1A/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_8G2B_098 | 1/1A/2522:2523, 1/1A/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_8G2B_100 | 1/1A/2591:2592, 1/1A/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_8G2B_101 | 1/1A/2636:2640, 1/1A/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_8G2B_102 | 1/1A/2652:2658, 1/1A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_8G2B_103 | 1/1A/2680:2684, 1/1A/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_8G2B_104 | 1/1A/2687:2691, 1/1A/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_8G2B_105 | 1/1A/2695:2696, 1/1A/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_8G2B_106 | 1/1A/2737:2742, 1/1A/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_8G2B_107 | 1/1A/2838:2839, 1/1A/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_8G2B_108 | 1/1A/2843:2846, 1/1A/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_8G2B_109 | 1/1A/2847:2852, 1/1A/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_8G2B_110 | 1/1B/17:18, 1/1B/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_8G2B_111 | 1/1B/23:28, 1/1B/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_8G2B_112 | 1/1B/30:31, 1/1B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_8G2B_113 | 1/1B/34:38, 1/1B/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_8G2B_114 | 1/1B/71:79, 1/1B/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_8G2B_115 | 1/1a/30:32, 1/1a/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_8G2B_116 | 1/1a/44:45, 1/1a/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_8G2B_117 | 1/1a/47:52, 1/1a/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_8G2B_118 | 1/1a/54:56, 1/1a/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_8G2B_121 | 1/1a/129:131, 1/1a/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_8G2B_122 | 1/1a/132:136, 1/1a/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_8G2B_123 | 1/1a/148:153, 1/1a/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_8G2B_124 | 1/1a/186:189, 1/1a/189K:191 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_85033.2 | |
| IL_8G2B_125 | 1/1a/242:247, 1/1a/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_8G2B_126 | 1/1a/249:252, 1/1a/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_8G2B_127 | 1/1a/292:293, 1/1a/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_8G2B_128 | 1/1a/367:369, 1/1a/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_8G2B_129 | 1/1a/371:375, 1/1a/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_8G2B_130 | 1/1a/375:376, 1/1a/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_8G2B_131 | 1/1a/409:416, 1/1a/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_8G2B_132 | 1/1a/446:450, 1/1a/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_8G2B_133 | 1/1a/450:455, 1/1a/476:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_8G2B_134 | 1/1a/504:511, 1/1a/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_8G2B_135 | 1/1a/515:521, 1/1a/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8G2B_136 | 1/1a/569:575, 1/1a/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_8G2B_137 | 1/1a/580:584, 1/1a/757:761 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_8G2B_138 | 1/1a/594:596, 1/1a/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_8G2B_139 | 1/1a/597:598, 1/1a/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_8G2B_140 | 1/1a/605:612, 1/1a/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_8G2B_141 | 1/1a/654:655, 1/1a/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_8G2B_142 | 1/1a/657:658, 1/1a/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_8G2B_143 | 1/1a/662:666, 1/1a/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_8G2B_356 | 1/1a/673:677, 1/1a/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_8G2B_145 | 1/1a/683:688, 1/1a/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_8G2B_146 | 1/1a/774:778, 1/1a/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_8G2B_147 | 1/1a/779:783, 1/1a/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_8G2B_148 | 1/1a/887:894, 1/1a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_8G2B_149 | 1/1a/922:923, 1/1a/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_8G2B_150 | 1/1a/925:927, 1/1a/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_8G2B_151 | 1/1a/933:935, 1/1a/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_8G2B_152 | 1/1a/953:954, 1/1a/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_8G2B_153 | 1/1a/993:997, 1/1a/1044:1045 | Minor groove platform | geometric IL_6CZR_151 NA | |
| IL_8G2B_154 | 1/1a/1048:1050, 1/1a/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_8G2B_156 | 1/1a/1052:1056, 1/1a/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_8G2B_157 | 1/1a/1057:1058, 1/1a/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_8G2B_158 | 1/1a/1060:1061, 1/1a/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_8G2B_159 | 1/1a/1061:1063, 1/1a/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_8G2B_160 | 1/1a/1124:1127, 1/1a/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_8G2B_161 | 1/1a/1129:1132, 1/1a/1142:1143 | Minor groove platform | homologous IL_4LFB_049 IL_15052.4 | |
| IL_8G2B_162 | 1/1a/1158:1161, 1/1a/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_8G2B_163 | 1/1a/1247:1253, 1/1a/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_8G2B_164 | 1/1a/1255:1258, 1/1a/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_8G2B_165 | 1/1a/1259:1260, 1/1a/1274:1276 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_8G2B_166 | 1/1a/1260:1262, 1/1a/1273:1274 | Minor groove platform | homologous IL_4LFB_054 IL_51454.2 | |
| IL_8G2B_167 | 1/1a/1303:1308, 1/1a/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_8G2B_168 | 1/1a/1399:1401, 1/1a/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_8G2B_357 | 1/1a/1401:1404, 1/1a/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_8G2B_358 | 1/1a/1405:1407, 1/1a/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_8G2B_359 | 1/1a/1407:1409, 1/1a/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_8G2B_171 | 1/1a/1412:1414, 1/1a/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_8G2B_172 | 1/1a/1416:1419, 1/1a/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_8G2B_173 | 1/1a/1431:1435, 1/1a/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_8G2B_174 | 1/1a/1435:1437, 1/1a/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_8G2B_175 | 1/1a/1440:1443, 1/1a/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_8G2B_177 | 1/2A/24:30, 1/2A/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_8G2B_178 | 1/2A/36:37, 1/2A/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_8G2B_179 | 1/2A/42:43, 1/2A/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_8G2B_180 | 1/2A/81:85, 1/2A/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_8G2B_181 | 1/2A/183:184, 1/2A/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_8G2B_182 | 1/2A/188:194, 1/2A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_8G2B_183 | 1/2A/239:245, 1/2A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_8G2B_184 | 1/2A/272D:272E, 1/2A/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_8G2B_185 | 1/2A/272J:279, 1/2A/361:363 | No text annotation | homologous IL_8VTW_009 NA | |
| IL_8G2B_186 | 1/2A/280:284, 1/2A/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_8G2B_187 | 1/2A/288:290, 1/2A/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_8G2B_188 | 1/2A/293:295, 1/2A/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_8G2B_189 | 1/2A/481:484, 1/2A/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_8G2B_190 | 1/2A/564:566, 1/2A/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_8G2B_191 | 1/2A/606:610, 1/2A/618:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_8G2B_192 | 1/2A/672:674, 1/2A/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_8G2B_193 | 1/2A/674:678, 1/2A/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_8G2B_194 | 1/2A/697:698, 1/2A/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_8G2B_195 | 1/2A/702:703, 1/2A/728:730 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_8G2B_196 | 1/2A/703:707, 1/2A/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_8G2B_197 | 1/2A/738:741, 1/2A/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_8G2B_198 | 1/2A/775:777, 1/2A/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_8G2B_199 | 1/2A/837:838, 1/2A/940:942 | Single stack bend | homologous IL_5J7L_266 IL_90729.1 | |
| IL_8G2B_200 | 1/2A/844:846, 1/2A/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_8G2B_360 | 1/2A/844:850, 1/2A/927:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_8G2B_201 | 1/2A/846:850, 1/2A/927:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_8G2B_361 | 1/2A/858:862, 1/2A/915:919 | No text annotation | homologous IL_9DFE_026 IL_38862.4 | |
| IL_8G2B_203 | 1/2A/862:863, 1/2A/913:915 | Minor groove platform | geometric IL_4V9F_034 IL_51454.2 | |
| IL_8G2B_204 | 1/2A/864:868, 1/2A/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_8G2B_206 | 1/2A/875:880, 1/2A/897:902 | No text annotation | ||
| IL_8G2B_207 | 1/2A/880:881, 1/2A/895:897 | Single bulged A | geometric IL_4V9F_098 IL_31462.5 | |
| IL_8G2B_208 | 1/2A/952:954, 1/2A/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_8G2B_209 | 1/2A/994:996, 1/2A/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_8G2B_210 | 1/2A/998:1002, 1/2A/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_8G2B_211 | 1/2A/1004:1011, 1/2A/1150:1151 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_8G2B_212 | 1/2A/1011:1013, 1/2A/1149:1150 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_8G2B_213 | 1/2A/1018:1024, 1/2A/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_8G2B_214 | 1/2A/1024:1030, 1/2A/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_8G2B_215 | 1/2A/1031:1034, 1/2A/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_8G2B_217 | 1/2A/1196:1198, 1/2A/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_8G2B_218 | 1/2A/1202:1206, 1/2A/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_8G2B_219 | 1/2A/1208:1215, 1/2A/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_8G2B_220 | 1/2A/1219:1221, 1/2A/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_8G2B_221 | 1/2A/1262:1269, 1/2A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_8G2B_222 | 1/2A/1310:1313, 1/2A/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_8G2B_223 | 1/2A/1319:1323, 1/2A/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_8G2B_224 | 1/2A/1351:1355, 1/2A/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_8G2B_225 | 1/2A/1357:1361, 1/2A/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_8G2B_226 | 1/2A/1415:1416, 1/2A/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_8G2B_227 | 1/2A/1417:1421, 1/2A/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_8G2B_228 | 1/2A/1433:1435, 1/2A/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_8G2B_229 | 1/2A/1437:1440, 1/2A/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_8G2B_230 | 1/2A/1448:1450, 1/2A/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_8G2B_231 | 1/2A/1450A:1451, 1/2A/1459:1461 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_8G2B_232 | 1/2A/1469:1473, 1/2A/1518:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_8G2B_233 | 1/2A/1481:1482, 1/2A/1506:1510 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_8G2B_234 | 1/2A/1489:1491, 1/2A/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_8G2B_235 | 1/2A/1526:1529, 1/2A/1540:1546 | No text annotation | geometric IL_7RQB_063 NA | |
| IL_8G2B_237 | 1/2A/1651:1656, 1/2A/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_8G2B_238 | 1/2A/1663:1665, 1/2A/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_8G2B_239 | 1/2A/1666:1669, 1/2A/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_8G2B_362 | 1/2A/1666:1674, 1/2A/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_8G2B_240 | 1/2A/1669:1674, 1/2A/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_8G2B_241 | 1/2A/1686:1691, 1/2A/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_8G2B_242 | 1/2A/1770:1771, 1/2A/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_8G2B_243 | 1/2A/1798:1804, 1/2A/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_8G2B_244 | 1/2A/1837:1840, 1/2A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_8G2B_245 | 1/2A/1841:1842, 1/2A/1898:1901 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_8G2B_246 | 1/2A/1846:1849, 1/2A/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_8G2B_247 | 1/2A/1851:1855, 1/2A/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_8G2B_248 | 1/2A/1856:1860, 1/2A/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_8G2B_249 | 1/2A/1933:1934, 1/2A/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.3 | |
| IL_8G2B_250 | 1/2A/1934:1945, 1/2A/1961:1964 | No text annotation | homologous IL_7RQB_077 NA | |
| IL_8G2B_251 | 1/2A/2050:2052, 1/2A/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_8G2B_252 | 1/2A/2054:2057, 1/2A/2611:2615 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_8G2B_253 | 1/2A/2067:2069, 1/2A/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_8G2B_254 | 1/2A/2070:2071, 1/2A/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_8G2B_255 | 1/2A/2081:2083, 1/2A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_8G2B_256 | 1/2A/2085:2087, 1/2A/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_8G2B_257 | 1/2A/2108:2110, 1/2A/2179:2181 | Isolated non-canonical cWW pair | geometric IL_4V9F_047 IL_28037.2 | |
| IL_8G2B_258 | 1/2A/2110:2120, 1/2A/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_8G2B_261 | 1/2A/2297:2299, 1/2A/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_8G2B_262 | 1/2A/2350:2353, 1/2A/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_8G2B_263 | 1/2A/2401:2403, 1/2A/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_8G2B_264 | 1/2A/2453:2454, 1/2A/2498:2500 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_8G2B_265 | 1/2A/2454:2455, 1/2A/2496:2498 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_8G2B_266 | 1/2A/2457:2459, 1/2A/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_8G2B_267 | 1/2A/2459:2461, 1/2A/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_8G2B_268 | 1/2A/2466:2470, 1/2A/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_8G2B_269 | 1/2A/2507:2508, 1/2A/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_8G2B_270 | 1/2A/2510:2512, 1/2A/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_8G2B_271 | 1/2A/2512:2513, 1/2A/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_8G2B_272 | 1/2A/2522:2523, 1/2A/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_8G2B_274 | 1/2A/2591:2592, 1/2A/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_8G2B_275 | 1/2A/2636:2640, 1/2A/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_8G2B_276 | 1/2A/2652:2658, 1/2A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_8G2B_277 | 1/2A/2680:2684, 1/2A/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_8G2B_278 | 1/2A/2687:2691, 1/2A/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_8G2B_279 | 1/2A/2695:2696, 1/2A/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_8G2B_280 | 1/2A/2737:2742, 1/2A/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_8G2B_281 | 1/2A/2838:2839, 1/2A/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_8G2B_282 | 1/2A/2843:2846, 1/2A/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_8G2B_283 | 1/2A/2847:2852, 1/2A/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_8G2B_284 | 1/2B/17:18, 1/2B/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_8G2B_285 | 1/2B/23:28, 1/2B/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_8G2B_370 | 1/2B/30:31, 1/2B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_8G2B_287 | 1/2B/34:38, 1/2B/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_8G2B_288 | 1/2B/71:79, 1/2B/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_8G2B_290 | 1/2a/30:32, 1/2a/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_8G2B_291 | 1/2a/44:45, 1/2a/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_8G2B_292 | 1/2a/47:52, 1/2a/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_8G2B_293 | 1/2a/54:56, 1/2a/356:357 | Minor groove platform | homologous IL_5J7L_004 IL_51454.2 | |
| IL_8G2B_294 | 1/2a/63:66, 1/2a/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_8G2B_295 | 1/2a/67:69, 1/2a/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_8G2B_296 | 1/2a/129:131, 1/2a/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_8G2B_297 | 1/2a/132:136, 1/2a/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_8G2B_298 | 1/2a/148:153, 1/2a/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_8G2B_299 | 1/2a/186:188, 1/2a/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_8G2B_300 | 1/2a/242:247, 1/2a/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_8G2B_301 | 1/2a/249:252, 1/2a/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_8G2B_302 | 1/2a/292:293, 1/2a/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_8G2B_303 | 1/2a/367:369, 1/2a/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_8G2B_304 | 1/2a/371:375, 1/2a/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_8G2B_305 | 1/2a/375:376, 1/2a/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_8G2B_306 | 1/2a/409:416, 1/2a/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_8G2B_307 | 1/2a/446:450, 1/2a/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_88269.4 | |
| IL_8G2B_308 | 1/2a/450:455, 1/2a/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_8G2B_309 | 1/2a/504:511, 1/2a/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_8G2B_310 | 1/2a/515:521, 1/2a/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_8G2B_311 | 1/2a/569:575, 1/2a/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_8G2B_312 | 1/2a/580:584, 1/2a/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_8G2B_313 | 1/2a/594:596, 1/2a/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_8G2B_314 | 1/2a/597:598, 1/2a/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_8G2B_315 | 1/2a/605:612, 1/2a/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_8G2B_316 | 1/2a/654:655, 1/2a/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_8G2B_317 | 1/2a/657:658, 1/2a/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_8G2B_318 | 1/2a/662:666, 1/2a/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_8G2B_363 | 1/2a/673:677, 1/2a/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_8G2B_320 | 1/2a/683:688, 1/2a/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_8G2B_321 | 1/2a/774:778, 1/2a/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_8G2B_322 | 1/2a/779:783, 1/2a/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_8G2B_323 | 1/2a/887:894, 1/2a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_8G2B_324 | 1/2a/922:923, 1/2a/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.5 | |
| IL_8G2B_325 | 1/2a/925:927, 1/2a/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_8G2B_326 | 1/2a/933:935, 1/2a/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_8G2B_327 | 1/2a/953:954, 1/2a/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_8G2B_328 | 1/2a/993:997, 1/2a/1044:1045 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_8G2B_329 | 1/2a/1048:1050, 1/2a/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_8G2B_331 | 1/2a/1052:1056, 1/2a/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_8G2B_332 | 1/2a/1057:1058, 1/2a/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_8G2B_333 | 1/2a/1060:1061, 1/2a/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_8G2B_334 | 1/2a/1061:1063, 1/2a/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_8G2B_335 | 1/2a/1124:1127, 1/2a/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_8G2B_336 | 1/2a/1129:1132, 1/2a/1142:1143 | Minor groove platform | homologous IL_4LFB_049 IL_15052.4 | |
| IL_8G2B_337 | 1/2a/1158:1161, 1/2a/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_8G2B_338 | 1/2a/1247:1253, 1/2a/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_8G2B_339 | 1/2a/1255:1258, 1/2a/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_8G2B_340 | 1/2a/1259:1262, 1/2a/1273:1276 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_8G2B_342 | 1/2a/1303:1308, 1/2a/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_8G2B_343 | 1/2a/1399:1401, 1/2a/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_8G2B_364 | 1/2a/1401:1404, 1/2a/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_8G2B_365 | 1/2a/1405:1407, 1/2a/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_8G2B_366 | 1/2a/1407:1409, 1/2a/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_8G2B_346 | 1/2a/1412:1414, 1/2a/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_8G2B_347 | 1/2a/1416:1419, 1/2a/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_8G2B_348 | 1/2a/1431:1435, 1/2a/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_8G2B_349 | 1/2a/1435:1437, 1/2a/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_8G2B_350 | 1/2a/1440:1443, 1/2a/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8G2B_009 | No text annotation | ||
| IL_8G2B_026 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8G2B_032 | No text annotation | ||
| IL_8G2B_042 | No text annotation | ||
| IL_8G2B_084 | No text annotation | ||
| IL_8G2B_086 | No text annotation | ||
| IL_8G2B_099 | No text annotation | ||
| IL_8G2B_119 | Multiple bulged bases | ||
| IL_8G2B_120 | Isolated non-canonical cWW pair | ||
| IL_8G2B_355 | No text annotation | ||
| IL_8G2B_144 | No text annotation | ||
| IL_8G2B_155 | Isolated non-canonical cWW pair | ||
| IL_8G2B_169 | No text annotation | ||
| IL_8G2B_170 | No text annotation | ||
| IL_8G2B_176 | No text annotation | ||
| IL_8G2B_202 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8G2B_205 | Tandem non-canonical cWW pairs | ||
| IL_8G2B_368 | No text annotation | ||
| IL_8G2B_216 | No text annotation | ||
| IL_8G2B_236 | No text annotation | ||
| IL_8G2B_259 | No text annotation | ||
| IL_8G2B_369 | Kink-turn | ||
| IL_8G2B_260 | No text annotation | ||
| IL_8G2B_273 | No text annotation | ||
| IL_8G2B_286 | No text annotation | ||
| IL_8G2B_289 | Stack and bulge | ||
| IL_8G2B_319 | No text annotation | ||
| IL_8G2B_330 | Isolated non-canonical cWW pair | ||
| IL_8G2B_341 | Isolated cWH basepair | ||
| IL_8G2B_344 | No text annotation | ||
| IL_8G2B_345 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8G2B_036 | 1/1A/30:31, 1/1A/474:481, 1/1A/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_8G2B_037 | 1/1A/30:31, 1/1A/474:484, 1/1A/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_8G2B_038 | 1/1A/32:35, 1/1A/445:461, 1/1A/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_8G2B_039 | 1/1A/56:57, 1/1A/70:76, 1/1A/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_8G2B_040 | 1/1A/269:271, 1/1A/271:272, 1/1A/366:370 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_8G2B_041 | 1/1A/297:301, 1/1A/316:325, 1/1A/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_8G2B_001 | 1/1A/683:689, 1/1A/773:775, 1/1A/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_8G2B_002 | 1/1A/698:700, 1/1A/732:736, 1/1A/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_8G2B_003 | 1/1A/1055:1058, 1/1A/1080:1087, 1/1A/1102:1104 | No text annotation | ||
| J3_8G2B_042 | 1/1A/1055:1058, 1/1A/1080:1091, 1/1A/1100:1104 | No text annotation | ||
| J3_8G2B_004 | 1/1A/1298:1303, 1/1A/1625:1627, 1/1A/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_8G2B_005 | 1/1A/1306:1309, 1/1A/1605:1611, 1/1A/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_8G2B_043 | 1/1A/1344:1350, 1/1A/1381:1385, 1/1A/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_8G2B_044 | 1/1A/1424:1429, 1/1A/1564:1565, 1/1A/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_8G2B_006 | 1/1A/2091:2093, 1/1A/2196:2200, 1/1A/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_8G2B_045 | 1/1A/2282:2284, 1/1A/2384:2395, 1/1A/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_8G2B_007 | 1/1A/2295:2297, 1/1A/2321:2323, 1/1A/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_8G2B_008 | 1/1A/2517:2520, 1/1A/2545:2547, 1/1A/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_8G2B_009 | 1/1A/2789:2791, 1/1A/2805:2811, 1/1A/2889:2894 | No text annotation | homologous J3_7RQB_013 NA | |
| J3_8G2B_046 | 1/1A/2814:2815, 1/1A/2831:2836, 1/1A/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_8G2B_047 | 1/1B/11:16, 1/1B/68:69, 1/1B/108:110 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_8G2B_048 | 1/1a/46:47, 1/1a/361:367, 1/1a/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_8G2B_049 | 1/1a/46:52, 1/1a/359:367, 1/1a/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_8G2B_050 | 1/1a/586:588, 1/1a/651:654, 1/1a/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_8G2B_051 | 1/1a/586:588, 1/1a/651:655, 1/1a/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_8G2B_052 | 1/1a/672:673, 1/1a/717:725, 1/1a/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_8G2B_011 | 1/1a/826:829, 1/1a/857:861, 1/1a/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_8G2B_012 | 1/1a/936:939, 1/1a/1344:1350, 1/1a/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_8G2B_013 | 1/1a/943:946, 1/1a/1235:1237, 1/1a/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_8G2B_014 | 1/1a/955:962, 1/1a/973:984, 1/1a/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_8G2B_015 | 1/1a/990:993, 1/1a/1045:1047, 1/1a/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_8G2B_053 | 1/1a/990:997, 1/1a/1044:1047, 1/1a/1210:1215 | No text annotation | homologous J3_6CZR_063 NA | |
| J3_8G2B_017 | 1/1a/1063:1068, 1/1a/1107:1113, 1/1a/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_8G2B_075 | 1/1a/1073:1074, 1/1a/1083:1086, 1/1a/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_8G2B_018 | 1/1a/1116:1118, 1/1a/1155:1158, 1/1a/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_8G2B_055 | 1/1a/1116:1118, 1/1a/1155:1161, 1/1a/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_8G2B_019 | 1/1a/1237:1241, 1/1a/1296:1303, 1/1a/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_8G2B_056 | 1/2A/30:31, 1/2A/474:481, 1/2A/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_8G2B_057 | 1/2A/30:31, 1/2A/474:484, 1/2A/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_8G2B_058 | 1/2A/32:35, 1/2A/445:461, 1/2A/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_8G2B_059 | 1/2A/56:57, 1/2A/70:76, 1/2A/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_8G2B_060 | 1/2A/269:271, 1/2A/271:272, 1/2A/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_8G2B_061 | 1/2A/297:301, 1/2A/316:325, 1/2A/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_8G2B_020 | 1/2A/683:689, 1/2A/773:775, 1/2A/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_8G2B_021 | 1/2A/698:700, 1/2A/732:736, 1/2A/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_8G2B_022 | 1/2A/1298:1303, 1/2A/1625:1627, 1/2A/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_8G2B_023 | 1/2A/1306:1309, 1/2A/1605:1611, 1/2A/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_8G2B_062 | 1/2A/1344:1350, 1/2A/1381:1385, 1/2A/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_8G2B_063 | 1/2A/1424:1429, 1/2A/1564:1565, 1/2A/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_8G2B_024 | 1/2A/2091:2093, 1/2A/2196:2200, 1/2A/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_8G2B_064 | 1/2A/2282:2284, 1/2A/2384:2395, 1/2A/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_8G2B_025 | 1/2A/2295:2297, 1/2A/2321:2323, 1/2A/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_8G2B_026 | 1/2A/2517:2520, 1/2A/2545:2547, 1/2A/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_8G2B_065 | 1/2A/2814:2815, 1/2A/2831:2836, 1/2A/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_8G2B_066 | 1/2B/11:16, 1/2B/68:69, 1/2B/108:110 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_8G2B_067 | 1/2a/46:47, 1/2a/361:367, 1/2a/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_8G2B_068 | 1/2a/46:52, 1/2a/359:367, 1/2a/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_8G2B_069 | 1/2a/586:588, 1/2a/651:654, 1/2a/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_8G2B_070 | 1/2a/586:588, 1/2a/651:655, 1/2a/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_8G2B_071 | 1/2a/672:673, 1/2a/717:725, 1/2a/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_8G2B_027 | 1/2a/826:829, 1/2a/857:861, 1/2a/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_8G2B_028 | 1/2a/936:939, 1/2a/1344:1350, 1/2a/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_8G2B_029 | 1/2a/943:946, 1/2a/1235:1237, 1/2a/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_8G2B_030 | 1/2a/955:962, 1/2a/973:984, 1/2a/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_8G2B_031 | 1/2a/990:993, 1/2a/1045:1047, 1/2a/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_8G2B_072 | 1/2a/990:997, 1/2a/1044:1047, 1/2a/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_8G2B_032 | 1/2a/1002:1006, 1/2a/1023:1028, 1/2a/1033:1038 | No text annotation | ||
| J3_8G2B_033 | 1/2a/1063:1068, 1/2a/1107:1113, 1/2a/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_8G2B_076 | 1/2a/1073:1074, 1/2a/1083:1086, 1/2a/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_8G2B_034 | 1/2a/1116:1118, 1/2a/1155:1158, 1/2a/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_8G2B_074 | 1/2a/1116:1118, 1/2a/1155:1161, 1/2a/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_8G2B_035 | 1/2a/1237:1241, 1/2a/1296:1303, 1/2a/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_8G2B_001 | 1/1A/268:269, 1/1A/370:375, 1/1A/399:406, 1/1A/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_8G2B_002 | 1/1A/297:301, 1/1A/316:319, 1/1A/323:325, 1/1A/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_8G2B_003 | 1/1A/1270:1276, 1/1A/1294:1295, 1/1A/1645:1648, 1/1A/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_8G2B_004 | 1/1A/1310:1314, 1/1A/1338:1343, 1/1A/1404:1405, 1/1A/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_8G2B_005 | 1/1A/1313:1314, 1/1A/1338:1343, 1/1A/1404:1405, 1/1A/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_8G2B_006 | 1/1A/1444:1445, 1/1A/1466:1467, 1/1A/1525:1526, 1/1A/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_8G2B_007 | 1/1A/1772:1776, 1/1A/1788:1792, 1/1A/1827:1830, 1/1A/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_8G2B_008 | 1/1A/1833:1835, 1/1A/1905:1906, 1/1A/1924:1933, 1/1A/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_8G2B_009 | 1/1A/2285:2289, 1/1A/2343:2347, 1/1A/2370:2372, 1/1A/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_8G2B_010 | 1/1A/2643:2646, 1/1A/2674:2676, 1/1A/2731:2735, 1/1A/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_8G2B_011 | 1/1a/115:122, 1/1a/239:240, 1/1a/286:289, 1/1a/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_8G2B_012 | 1/1a/142:144, 1/1a/178:183, 1/1a/194:198, 1/1a/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_8G2B_013 | 1/1a/575:577, 1/1a/764:769, 1/1a/810:821, 1/1a/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_8G2B_014 | 1/1w/7:10, 1/1w/25:27, 1/1w/43:49, 1/1w/65:66 | tRNA junction | homologous J4_3TUP_001 J4_70449.27 | |
| J4_8G2B_015 | 1/1x/7:10, 1/1x/25:27, 1/1x/43:49, 1/1x/65:66 | No text annotation | homologous J4_9DFC_015 J4_70449.27 | |
| J4_8G2B_016 | 1/1y/7:10, 1/1y/25:27, 1/1y/43:49, 1/1y/65:66 | No text annotation | homologous J4_4WT8_031 NA | |
| J4_8G2B_017 | 1/2A/268:269, 1/2A/370:375, 1/2A/399:406, 1/2A/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_8G2B_018 | 1/2A/297:301, 1/2A/316:319, 1/2A/323:325, 1/2A/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_8G2B_019 | 1/2A/1270:1276, 1/2A/1294:1295, 1/2A/1645:1648, 1/2A/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_8G2B_020 | 1/2A/1310:1314, 1/2A/1338:1343, 1/2A/1404:1405, 1/2A/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_8G2B_021 | 1/2A/1313:1314, 1/2A/1338:1343, 1/2A/1404:1405, 1/2A/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_8G2B_022 | 1/2A/1444:1445, 1/2A/1466:1467, 1/2A/1525:1526, 1/2A/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_8G2B_023 | 1/2A/1772:1776, 1/2A/1788:1792, 1/2A/1827:1830, 1/2A/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_8G2B_024 | 1/2A/1833:1835, 1/2A/1905:1906, 1/2A/1924:1933, 1/2A/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_8G2B_025 | 1/2A/2285:2289, 1/2A/2343:2347, 1/2A/2370:2372, 1/2A/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_8G2B_026 | 1/2A/2643:2646, 1/2A/2674:2676, 1/2A/2731:2735, 1/2A/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_8G2B_027 | 1/2a/115:122, 1/2a/239:240, 1/2a/286:289, 1/2a/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_8G2B_028 | 1/2a/142:144, 1/2a/178:183, 1/2a/194:198, 1/2a/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_8G2B_029 | 1/2a/575:577, 1/2a/764:769, 1/2a/810:821, 1/2a/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_8G2B_030 | 1/2w/7:10, 1/2w/25:27, 1/2w/43:49, 1/2w/65:66 | tRNA junction | homologous J4_3WQY_001 J4_70449.27 | |
| J4_8G2B_031 | 1/2x/7:10, 1/2x/25:27, 1/2x/43:49, 1/2x/65:66 | No text annotation | homologous J4_6CFJ_015 J4_70449.27 | |
| J4_8G2B_032 | 1/2y/7:10, 1/2y/25:27, 1/2y/43:49, 1/2y/65:66 | tRNA junction | homologous J4_3WQY_001 J4_70449.27 | |
| J5_8G2B_001 | 1/1A/47:54, 1/1A/116:121, 1/1A/130:131, 1/1A/148:150, 1/1A/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_8G2B_002 | 1/1A/268:271, 1/1A/271:272, 1/1A/366:375, 1/1A/399:406, 1/1A/421:424 | No text annotation | ||
| J5_8G2B_003 | 1/1A/531:533, 1/1A/560:564, 1/1A/577:579, 1/1A/1261:1262, 1/1A/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_8G2B_004 | 1/1A/584:589, 1/1A/668:671, 1/1A/809:812, 1/1A/1195:1196, 1/1A/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_8G2B_005 | 1/1A/1674:1682, 1/1A/1706:1707, 1/1A/1751:1752, 1/1A/1756:1764, 1/1A/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_8G2B_006 | 1/1A/2057:2064, 1/1A/2446:2453, 1/1A/2500:2507, 1/1A/2582:2588, 1/1A/2606:2611 | No text annotation | ||
| J5_8G2B_007 | 1/1A/2074:2077, 1/1A/2243:2246, 1/1A/2258:2259, 1/1A/2281:2282, 1/1A/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_8G2B_008 | 1/1a/36:39, 1/1a/403:406, 1/1a/436:442, 1/1a/492:500, 1/1a/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_8G2B_009 | 1/1a/58:61, 1/1a/106:113, 1/1a/314:316, 1/1a/337:339, 1/1a/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_8G2B_010 | 1/2A/47:54, 1/2A/116:121, 1/2A/130:131, 1/2A/148:150, 1/2A/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_8G2B_011 | 1/2A/268:271, 1/2A/271:272, 1/2A/366:375, 1/2A/399:406, 1/2A/421:424 | No text annotation | ||
| J5_8G2B_012 | 1/2A/531:533, 1/2A/560:564, 1/2A/577:579, 1/2A/1261:1262, 1/2A/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_8G2B_013 | 1/2A/584:589, 1/2A/668:671, 1/2A/809:812, 1/2A/1195:1196, 1/2A/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_8G2B_014 | 1/2A/601:604, 1/2A/624:628, 1/2A/635:638, 1/2A/650:652, 1/2A/652:656 | No text annotation | ||
| J5_8G2B_015 | 1/2A/1674:1682, 1/2A/1706:1707, 1/2A/1751:1752, 1/2A/1756:1764, 1/2A/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_8G2B_016 | 1/2A/2057:2064, 1/2A/2446:2453, 1/2A/2500:2507, 1/2A/2582:2588, 1/2A/2606:2611 | No text annotation | ||
| J5_8G2B_017 | 1/2A/2074:2077, 1/2A/2243:2246, 1/2A/2258:2259, 1/2A/2281:2282, 1/2A/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_8G2B_018 | 1/2a/36:39, 1/2a/403:406, 1/2a/436:442, 1/2a/492:500, 1/2a/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_8G2B_019 | 1/2a/58:61, 1/2a/106:113, 1/2a/314:316, 1/2a/337:339, 1/2a/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J6_8G2B_001 | 1/1A/44:45, 1/1A/179:183, 1/1A/214:224, 1/1A/231:235, 1/1A/262:266, 1/1A/426:433 | No text annotation | ||
| J6_8G2B_002 | 1/1A/2074:2077, 1/1A/2243:2246, 1/1A/2258:2259, 1/1A/2281:2284, 1/1A/2384:2395, 1/1A/2421:2435 | No text annotation | ||
| J6_8G2B_003 | 1/2A/44:45, 1/2A/179:183, 1/2A/214:224, 1/2A/231:235, 1/2A/262:266, 1/2A/426:433 | No text annotation | ||
| J6_8G2B_004 | 1/2A/2074:2077, 1/2A/2243:2246, 1/2A/2258:2259, 1/2A/2281:2284, 1/2A/2384:2395, 1/2A/2421:2435 | No text annotation | ||
| J7_8G2B_001 | 1/1A/817:822, 1/1A/835:836, 1/1A/943:946, 1/1A/971:976, 1/1A/987:991, 1/1A/1163:1164, 1/1A/1185:1190 | No text annotation | ||
| J7_8G2B_002 | 1/2A/817:822, 1/2A/835:836, 1/2A/943:946, 1/2A/971:976, 1/2A/987:991, 1/2A/1163:1164, 1/2A/1185:1190 | No text annotation | ||
| J8_8G2B_001 | 1/1A/8:15, 1/1A/525:531, 1/1A/2018:2023, 1/1A/2040:2043, 1/1A/2625:2630, 1/1A/2788:2791, 1/1A/2805:2811, 1/1A/2889:2895 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8G2B_010 | No text annotation | ||
| J3_8G2B_016 | No text annotation | ||
| J3_8G2B_054 | No text annotation | ||
| J3_8G2B_073 | No text annotation |
Coloring options: