HL_11GG_029
3D structure
- PDB id
- 11GG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11GG_029 not in the Motif Atlas
- Homologous match to HL_6CZR_100
- Geometric discrepancy: 0.2064
- The information below is about HL_6CZR_100
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.2
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
11GG|1|C|C|1308
11GG|1|C|U|1309
11GG|1|C|G|1310
11GG|1|C|C|1311
11GG|1|C|A|1312
11GG|1|C|A|1313
11GG|1|C|C|1314
11GG|1|C|U|1315
11GG|1|C|C|1316
11GG|1|C|G|1317
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Small ribosomal subunit protein uS19
- Chain u
- Small ribosomal subunit protein uS13
- Chain v
- Small ribosomal subunit protein uS14
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