HL_11JJ_032

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

11JJ|1|18|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_032 not in the Motif Atlas

Homologous match to HL_9PN5_109

Geometric discrepancy: 0.4231

The information below is about HL_9PN5_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25307.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

11JJ|1|18|G|1658
11JJ|1|18|U|1659
11JJ|1|18|C|1660
11JJ|1|18|A|1661
11JJ|1|18|U|1662
11JJ|1|18|A|1663
11JJ|1|18|A|1664
11JJ|1|18|G|1665
11JJ|1|18|C|1666

Current chains

Chain 18

18S rRNA

Nearby chains

Chain II

Small ribosomal subunit protein uS9

Chain MM

Small ribosomal subunit protein eS19

Chain OO

40S ribosomal protein S20

Chain XX

40S ribosomal protein S29