HL_1J5A_045

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

1J5A|1|A|A|1771, 1J5A|1|A|C|1772, 1J5A|1|A|C|1773, 1J5A|1|A|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_045 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.1955

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

1J5A|1|A|G|1767
1J5A|1|A|U|1768
1J5A|1|A|U|1769
1J5A|1|A|U|1770
1J5A|1|A|A|1771
1J5A|1|A|C|1772
1J5A|1|A|C|1773
1J5A|1|A|A|1774
1J5A|1|A|A|1775
1J5A|1|A|A|1776
1J5A|1|A|A|1777
1J5A|1|A|U|1778
1J5A|1|A|C|1779

Current chains

Chain A

23S RRNA

Nearby chains