HL_1NKW_043

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

1NKW|1|0|A|1771, 1NKW|1|0|C|1772, 1NKW|1|0|C|1773, 1NKW|1|0|A|1775, 1NKW|1|0|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_043 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.2759

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60266.1

Basepair signature

cWW-cWW-tWH-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1NKW|1|0|G|1767
1NKW|1|0|U|1768
1NKW|1|0|U|1769
1NKW|1|0|U|1770
1NKW|1|0|A|1771
1NKW|1|0|C|1772
1NKW|1|0|C|1773
1NKW|1|0|A|1774
1NKW|1|0|A|1775
1NKW|1|0|A|1776
1NKW|1|0|A|1777
1NKW|1|0|U|1778
1NKW|1|0|C|1779

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2