HL_1NKW_047

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

1NKW|1|0|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_047 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2149

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1NKW|1|0|G|1932
1NKW|1|0|G|1933
1NKW|1|0|U|1934
1NKW|1|0|A|1935
1NKW|1|0|A|1936
1NKW|1|0|G|1937
1NKW|1|0|U|1938
1NKW|1|0|U|1939
1NKW|1|0|C|1940

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L14