HL_1NKW_076

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

1NKW|1|0|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_076 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.2328

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

1NKW|1|0|U|2507
1NKW|1|0|G|2508
1NKW|1|0|A|2509
1NKW|1|0|A|2510
1NKW|1|0|G|2511
1NKW|1|0|A|2512
1NKW|1|0|A|2513
1NKW|1|0|G|2514

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6