3D structure

PDB id
1NKW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGAAGAAG
Length
8 nucleotides
Bulged bases
1NKW|1|0|G|2508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1NKW_076 not in the Motif Atlas
Homologous match to HL_7A0S_060
Geometric discrepancy: 0.2328
The information below is about HL_7A0S_060
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_31585.4
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
20

Unit IDs

1NKW|1|0|U|2507
1NKW|1|0|G|2508
1NKW|1|0|A|2509
1NKW|1|0|A|2510
1NKW|1|0|G|2511
1NKW|1|0|A|2512
1NKW|1|0|A|2513
1NKW|1|0|G|2514

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain E
50S ribosomal protein L6

Coloring options:


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