HL_1VY7_079
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 1VY7|1|BA|A|1780, 1VY7|1|BA|C|1781, 1VY7|1|BA|C|1782, 1VY7|1|BA|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY7_079 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.0495
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
1VY7|1|BA|U|1777
1VY7|1|BA|U|1778
1VY7|1|BA|U|1779
1VY7|1|BA|A|1780
1VY7|1|BA|C|1781
1VY7|1|BA|C|1782
1VY7|1|BA|A|1783
1VY7|1|BA|A|1784
1VY7|1|BA|A|1785
1VY7|1|BA|A|1786
1VY7|1|BA|A|1787
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B7
- 50S ribosomal protein L34
- Chain BD
- 50S ribosomal protein L2
- Chain BW
- 50S ribosomal protein L22
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