HL_1VY7_111

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

1VY7|1|CA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY7_111 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1059

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1VY7|1|CA|G|259
1VY7|1|CA|G|260
1VY7|1|CA|U|261
1VY7|1|CA|A|262
1VY7|1|CA|A|263
1VY7|1|CA|U|264
1VY7|1|CA|G|265
1VY7|1|CA|G|266
1VY7|1|CA|C|267

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CQ

30S ribosomal protein S17

Chain CT

30S ribosomal protein S20