HL_1VY7_122
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 1VY7|1|CA|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY7_122 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.102
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
1VY7|1|CA|G|786
1VY7|1|CA|A|787
1VY7|1|CA|U|788
1VY7|1|CA|U|789
1VY7|1|CA|A|790
1VY7|1|CA|G|791
1VY7|1|CA|A|792
1VY7|1|CA|U|793
1VY7|1|CA|A|794
1VY7|1|CA|C|795
1VY7|1|CA|C|796
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CK
- 30S ribosomal protein S11
- Chain CV
- mRNA
- Chain CX
- Transfer RNA; tRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: