HL_1VY7_158
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UAUUGAAGCA
- Length
- 10 nucleotides
- Bulged bases
- 1VY7|1|DA|C|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY7_158 not in the Motif Atlas
- Homologous match to HL_7RQB_018
- Geometric discrepancy: 0.0612
- The information below is about HL_7RQB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_41998.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 69
Unit IDs
1VY7|1|DA|U|566
1VY7|1|DA|A|567
1VY7|1|DA|U|568
1VY7|1|DA|U|569
1VY7|1|DA|G|570
1VY7|1|DA|A|571
1VY7|1|DA|A|572
1VY7|1|DA|G|573
1VY7|1|DA|C|574
1VY7|1|DA|A|575
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D5
- 50S ribosomal protein L32
- Chain DE
- 50S ribosomal protein L3
- Chain DP
- 50S ribosomal protein L15
- Chain DV
- 50S ribosomal protein L21
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