HL_1Y39_001
3D structure
- PDB id
- 1Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-evolution of protein and RNA structures within a highly conserved ribosomal domain
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUAGAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 1Y39|1|C|A|120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1Y39_001 not in the Motif Atlas
- Geometric match to HL_5D8H_001
- Geometric discrepancy: 0.0819
- The information below is about HL_5D8H_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20174.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
1Y39|1|C|C|114
1Y39|1|C|U|115
1Y39|1|C|U|116
1Y39|1|C|A|117
1Y39|1|C|G|118
1Y39|1|C|A|119
1Y39|1|C|A|120
1Y39|1|C|G|121
1Y39|1|C|C|122
1Y39|1|C|A|123
1Y39|1|C|G|124
Current chains
- Chain C
- 58 Nucleotide Ribosomal 23S RNA Domain
Nearby chains
- Chain A
- 50S ribosomal protein L11
- Chain B
- 50S ribosomal protein L11
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
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