HL_1Y39_003

3D structure

PDB id

1Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-evolution of protein and RNA structures within a highly conserved ribosomal domain

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1Y39|1|D|A|320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y39_003 not in the Motif Atlas

Geometric match to HL_5D8H_001

Geometric discrepancy: 0.0679

The information below is about HL_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

1Y39|1|D|C|314
1Y39|1|D|U|315
1Y39|1|D|U|316
1Y39|1|D|A|317
1Y39|1|D|G|318
1Y39|1|D|A|319
1Y39|1|D|A|320
1Y39|1|D|G|321
1Y39|1|D|C|322
1Y39|1|D|A|323
1Y39|1|D|G|324

Current chains

Chain D

58 Nucleotide Ribosomal 23S RNA Domain

Nearby chains

Chain B

50S ribosomal protein L11