HL_1Z58_062

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1Z58|1|2|G|2731, 1Z58|1|2|C|2735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Z58_062 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.4

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

1Z58|1|2|C|2725
1Z58|1|2|U|2726
1Z58|1|2|G|2727
1Z58|1|2|A|2728
1Z58|1|2|A|2729
1Z58|1|2|A|2730
1Z58|1|2|G|2731
1Z58|1|2|C|2732
1Z58|1|2|A|2733
1Z58|1|2|U|2734
1Z58|1|2|C|2735
1Z58|1|2|U|2736
1Z58|1|2|A|2737
1Z58|1|2|A|2738
1Z58|1|2|G|2739

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains