HL_28LN_020

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA(PSU)CAGAUACC

Length

11 nucleotides

Bulged bases

28LN|1|A2|U|1061

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|G|1054
28LN|1|A2|A|1055
28LN|1|A2|PSU|1056
28LN|1|A2|C|1057
28LN|1|A2|A|1058
28LN|1|A2|G|1059
28LN|1|A2|A|1060
28LN|1|A2|U|1061
28LN|1|A2|A|1062
28LN|1|A2|C|1063
28LN|1|A2|C|1064

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AB

40S ribosomal protein S3a

Chain AO

40S ribosomal protein S14

Chain B2

Transfer RNA; tRNA

Chain B4

mRNA fragment (6-MER)

Chain B5

Large subunit ribosomal RNA; LSU rRNA