HL_28LN_024

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC(B8N)CAACAC

Length

10 nucleotides

Bulged bases

28LN|1|A2|A|1253

QA status

Modified nucleotides: B8N

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_024 not in the Motif Atlas

Homologous match to HL_9PN5_101

Geometric discrepancy: 0.1088

The information below is about HL_9PN5_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

28LN|1|A2|G|1245
28LN|1|A2|A|1246
28LN|1|A2|C|1247
28LN|1|A2|B8N|1248
28LN|1|A2|C|1249
28LN|1|A2|A|1250
28LN|1|A2|A|1251
28LN|1|A2|C|1252
28LN|1|A2|A|1253
28LN|1|A2|C|1254

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AP

40S ribosomal protein S15

Chain AQ

40S ribosomal protein S16

Chain AU

40S ribosomal protein S20

Chain Ad

40S ribosomal protein S29

Chain Af

Ubiquitin

Chain B2

Transfer RNA; tRNA