HL_28LN_088
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 28LN|1|B5|A|3875, 28LN|1|B5|A|3876, 28LN|1|B5|C|3877
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28LN_088 not in the Motif Atlas
- Homologous match to HL_9AXU_047
- Geometric discrepancy: 0.0954
- The information below is about HL_9AXU_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.4
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
28LN|1|B5|G|3872
28LN|1|B5|G|3873
28LN|1|B5|G|3874
28LN|1|B5|A|3875
28LN|1|B5|A|3876
28LN|1|B5|C|3877
28LN|1|B5|G|3878
28LN|1|B5|G|3879
28LN|1|B5|G|3880
28LN|1|B5|C|3881
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL3
- Chain Be
- 60S ribosomal protein L32
Coloring options: