HL_28LN_105

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

28LN|1|B5|A|4909, 28LN|1|B5|A|4910, 28LN|1|B5|G|4912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28LN_105 not in the Motif Atlas

Homologous match to HL_8GLP_074

Geometric discrepancy: 0.1502

The information below is about HL_8GLP_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

28LN|1|B5|G|4906
28LN|1|B5|G|4907
28LN|1|B5|A|4908
28LN|1|B5|A|4909
28LN|1|B5|A|4910
28LN|1|B5|G|4911
28LN|1|B5|G|4912
28LN|1|B5|C|4913

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3

Chain BO

60S ribosomal protein L13a