HL_2J28_008

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_008 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.3647

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

2J28|1|B|U|158
2J28|1|B|G|159
2J28|1|B|A|160
2J28|1|B|A|161
2J28|1|B|U|162
2J28|1|B|C|163
2J28|1|B|C|164
2J28|1|B|A|165
2J28|1|B|U|166
2J28|1|B|A|167
2J28|1|B|G|168

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain Z

50S RIBOSOMAL PROTEIN L31