HL_2J28_015

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

2J28|1|B|G|386, 2J28|1|B|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2J28_015 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1533

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

2J28|1|B|A|382
2J28|1|B|C|383
2J28|1|B|A|384
2J28|1|B|C|385
2J28|1|B|G|386
2J28|1|B|U|387
2J28|1|B|G|388
2J28|1|B|G|389
2J28|1|B|U|390
2J28|1|B|A|391
2J28|1|B|U|392

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain Z

50S RIBOSOMAL PROTEIN L31