HL_2JL6_030

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

2JL6|1|A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_030 not in the Motif Atlas

Geometric match to HL_5D8H_001

Geometric discrepancy: 0.1798

The information below is about HL_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

2JL6|1|A|C|1064
2JL6|1|A|U|1065
2JL6|1|A|U|1066
2JL6|1|A|A|1067
2JL6|1|A|G|1068
2JL6|1|A|A|1069
2JL6|1|A|A|1070
2JL6|1|A|G|1071
2JL6|1|A|C|1072
2JL6|1|A|A|1073
2JL6|1|A|G|1074

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain K

50S RIBOSOMAL PROTEIN L11

Chain Q

50S RIBOSOMAL PROTEIN L16