HL_2JL6_068

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

2JL6|1|A|G|2751, 2JL6|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2JL6_068 not in the Motif Atlas

Geometric match to HL_7RQB_066

Geometric discrepancy: 0.1144

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

2JL6|1|A|C|2745
2JL6|1|A|U|2746
2JL6|1|A|G|2747
2JL6|1|A|A|2748
2JL6|1|A|A|2749
2JL6|1|A|A|2750
2JL6|1|A|G|2751
2JL6|1|A|C|2752
2JL6|1|A|A|2753
2JL6|1|A|U|2754
2JL6|1|A|C|2755
2JL6|1|A|U|2756
2JL6|1|A|A|2757
2JL6|1|A|A|2758
2JL6|1|A|G|2759

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 9

50S RIBOSOMAL PROTEIN L36

Chain H

50S RIBOSOMAL PROTEIN L6

Chain N

50S RIBOSOMAL PROTEIN L13