HL_2KXM_009

3D structure

PDB id

2KXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostmycin complex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUUAAUG

Length

8 nucleotides

Bulged bases

2KXM|9|A|A|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2KXM_009 not in the Motif Atlas

Geometric match to HL_5J7L_024

Geometric discrepancy: 0.22

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

2KXM|9|A|C|12
2KXM|9|A|U|13
2KXM|9|A|U|14
2KXM|9|A|U|15
2KXM|9|A|A|16
2KXM|9|A|A|17
2KXM|9|A|U|18
2KXM|9|A|G|19

Current chains

Chain A

RNA (27-MER)

Nearby chains