HL_2OGO_007

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAGAAUUC

Length

8 nucleotides

Bulged bases

2OGO|1|0|A|204, 2OGO|1|0|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2OGO_007 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.3684

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

2OGO|1|0|G|201
2OGO|1|0|A|202
2OGO|1|0|G|203
2OGO|1|0|A|204
2OGO|1|0|A|205
2OGO|1|0|U|206
2OGO|1|0|U|207
2OGO|1|0|C|208

Current chains

Chain 0

23S ribosomal RNA

Nearby chains