HL_3BBX_007

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_007 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.3221

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3BBX|1|B|U|158
3BBX|1|B|G|159
3BBX|1|B|A|160
3BBX|1|B|A|161
3BBX|1|B|U|162
3BBX|1|B|C|163
3BBX|1|B|C|164
3BBX|1|B|A|165
3BBX|1|B|U|166
3BBX|1|B|A|167
3BBX|1|B|G|168

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L31