3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
UGAAUCCAUAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3BBX_007 not in the Motif Atlas
Homologous match to HL_5J7L_138
Geometric discrepancy: 0.3221
The information below is about HL_5J7L_138
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_68257.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

3BBX|1|B|U|158
3BBX|1|B|G|159
3BBX|1|B|A|160
3BBX|1|B|A|161
3BBX|1|B|U|162
3BBX|1|B|C|163
3BBX|1|B|C|164
3BBX|1|B|A|165
3BBX|1|B|U|166
3BBX|1|B|A|167
3BBX|1|B|G|168

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain Z
50S ribosomal protein L31

Coloring options:


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