HL_3BBX_014

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

3BBX|1|B|G|386, 3BBX|1|B|G|389

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3BBX_014 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1134

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3BBX|1|B|A|382
3BBX|1|B|C|383
3BBX|1|B|A|384
3BBX|1|B|C|385
3BBX|1|B|G|386
3BBX|1|B|U|387
3BBX|1|B|G|388
3BBX|1|B|G|389
3BBX|1|B|U|390
3BBX|1|B|A|391
3BBX|1|B|U|392

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L31