HL_3DEG_002
3D structure
- PDB id
- 3DEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.9 Å
Loop
- Sequence
- AGA(OMC)U(OMG)AA(YG)A(PSU)(5MC)U
- Length
- 13 nucleotides
- Bulged bases
- 3DEG|1|A|A|38
- QA status
- Modified nucleotides: OMC, OMG, YG, PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3DEG_002 not in the Motif Atlas
- Homologous match to HL_6GSL_221
- Geometric discrepancy: 0.444
- The information below is about HL_6GSL_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
3DEG|1|A|A|29
3DEG|1|A|G|30
3DEG|1|A|A|31
3DEG|1|A|OMC|32
3DEG|1|A|U|33
3DEG|1|A|OMG|34
3DEG|1|A|A|35
3DEG|1|A|A|36
3DEG|1|A|YG|37
3DEG|1|A|A|38
3DEG|1|A|PSU|39
3DEG|1|A|5MC|40
3DEG|1|A|U|41
Current chains
- Chain A
- A/L-tRNA
Nearby chains
- Chain C
- GTP-binding protein lepA
- Chain D
- 30S ribosomal protein S12
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