HL_3EOG_008

3D structure

PDB id

3EOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystallization showing exon recognition by a group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CGAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3EOG_008 not in the Motif Atlas

Geometric match to HL_3IGI_009

Geometric discrepancy: 0.0709

The information below is about HL_3IGI_009

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_64036.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

27

Unit IDs

3EOG|1|A|C|368
3EOG|1|A|G|369
3EOG|1|A|A|370
3EOG|1|A|A|371
3EOG|1|A|C|372
3EOG|1|A|G|373

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

5'-R(*UP*UP*AP*UP*UP*A)-3'