HL_3J0L_003
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 3J0L|1|c|U|982
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0L_003 not in the Motif Atlas
- Geometric match to HL_5J7L_017
- Geometric discrepancy: 0.172
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
3J0L|1|c|G|975
3J0L|1|c|A|976
3J0L|1|c|U|977
3J0L|1|c|C|978
3J0L|1|c|A|979
3J0L|1|c|G|980
3J0L|1|c|A|981
3J0L|1|c|U|982
3J0L|1|c|A|983
3J0L|1|c|C|984
3J0L|1|c|C|985
Current chains
- Chain c
- 40S ribosomal RNA fragment
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- Ribosomal protein S14
- Chain V
- Transfer RNA; tRNA
- Chain W
- Transfer RNA; tRNA
- Chain b
- 40S ribosomal RNA fragment
- Chain h
- Small subunit ribosomal RNA; SSU rRNA
- Chain v
- mRNA fragment
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