HL_3J0L_013
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J0L_013 not in the Motif Atlas
- Homologous match to HL_8C3A_062
- Geometric discrepancy: 0.3334
- The information below is about HL_8C3A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
3J0L|1|7|C|2840
3J0L|1|7|G|2841
3J0L|1|7|U|2842
3J0L|1|7|U|2843
3J0L|1|7|C|2844
3J0L|1|7|A|2845
3J0L|1|7|U|2846
3J0L|1|7|A|2847
3J0L|1|7|G|2848
Current chains
- Chain 7
- 60S ribosomal RNA fragment
Nearby chains
- Chain Y
- Transfer RNA; tRNA
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