HL_3J0P_008

3D structure

PDB id

3J0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

10.6 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J0P_008 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.3334

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J0P|1|7|C|2840
3J0P|1|7|G|2841
3J0P|1|7|U|2842
3J0P|1|7|U|2843
3J0P|1|7|C|2844
3J0P|1|7|A|2845
3J0P|1|7|U|2846
3J0P|1|7|A|2847
3J0P|1|7|G|2848

Current chains

Chain 7

60S ribosomal RNA fragment

Nearby chains