HL_3J2A_017

3D structure

PDB id

3J2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

3J2A|1|N|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2A_017 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.5103

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3J2A|1|N|G|786
3J2A|1|N|A|787
3J2A|1|N|U|788
3J2A|1|N|U|789
3J2A|1|N|A|790
3J2A|1|N|G|791
3J2A|1|N|A|792
3J2A|1|N|U|793
3J2A|1|N|A|794
3J2A|1|N|C|795
3J2A|1|N|C|796

Current chains

Chain N

16S rRNA

Nearby chains