HL_3J2D_037

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

3J2D|1|N|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J2D_037 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.3595

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J2D|1|N|G|259
3J2D|1|N|G|260
3J2D|1|N|U|261
3J2D|1|N|A|262
3J2D|1|N|A|263
3J2D|1|N|C|264
3J2D|1|N|G|265
3J2D|1|N|G|266
3J2D|1|N|C|267

Current chains

Chain N

16S rRNA

Nearby chains