HL_3J6X_019
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- 3J6X|1|1S|U|830
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6X_019 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.3291
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3J6X|1|1S|A|829
3J6X|1|1S|U|830
3J6X|1|1S|U|831
3J6X|1|1S|U|832
3J6X|1|1S|U|833
3J6X|1|1S|G|834
3J6X|1|1S|U|835
3J6X|1|1S|U|836
3J6X|1|1S|G|837
3J6X|1|1S|G|838
3J6X|1|1S|U|839
3J6X|1|1S|U|840
3J6X|1|1S|U|841
3J6X|1|1S|C|842
3J6X|1|1S|U|843
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
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