HL_3J6X_084
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 3J6X|1|2S|A|2138, 3J6X|1|2S|A|2139, 3J6X|1|2S|U|2140, 3J6X|1|2S|A|2144
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6X_084 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.2621
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
3J6X|1|2S|U|2135
3J6X|1|2S|C|2136
3J6X|1|2S|U|2137
3J6X|1|2S|A|2138
3J6X|1|2S|A|2139
3J6X|1|2S|U|2140
3J6X|1|2S|U|2141
3J6X|1|2S|A|2142
3J6X|1|2S|A|2143
3J6X|1|2S|A|2144
3J6X|1|2S|A|2145
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 77
- 60S ribosomal protein L37
- Chain L2
- 60S ribosomal protein L2
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