HL_3J6Y_008

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

3J6Y|1|1S|G|337

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_008 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.158

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

3J6Y|1|1S|G|330
3J6Y|1|1S|A|331
3J6Y|1|1S|U|332
3J6Y|1|1S|A|333
3J6Y|1|1S|G|334
3J6Y|1|1S|U|335
3J6Y|1|1S|G|336
3J6Y|1|1S|G|337
3J6Y|1|1S|C|338

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 11

40S ribosomal protein S11

Chain S8

40S ribosomal protein S8