HL_3J6Y_026
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 3J6Y|1|1S|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6Y_026 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.2406
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3J6Y|1|1S|G|1188
3J6Y|1|1S|A|1189
3J6Y|1|1S|C|1190
3J6Y|1|1S|U|1191
3J6Y|1|1S|C|1192
3J6Y|1|1S|A|1193
3J6Y|1|1S|A|1194
3J6Y|1|1S|C|1195
3J6Y|1|1S|A|1196
3J6Y|1|1S|C|1197
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 16
- 40S ribosomal protein S16
- Chain 20
- 40S ribosomal protein S20
- Chain IR
- TSV IRES mRNA
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