HL_3J6Y_027
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 3J6Y|1|1S|G|1243
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6Y_027 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.1961
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
3J6Y|1|1S|A|1238
3J6Y|1|1S|U|1239
3J6Y|1|1S|U|1240
3J6Y|1|1S|G|1241
3J6Y|1|1S|A|1242
3J6Y|1|1S|G|1243
3J6Y|1|1S|A|1244
3J6Y|1|1S|G|1245
3J6Y|1|1S|C|1246
3J6Y|1|1S|U|1247
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 15
- 40S ribosomal protein S15
- Chain 29
- 40S ribosomal protein S29
- Chain 31
- 40S ribosomal protein S31
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