HL_3J6Y_064

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J6Y_064 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.3094

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3J6Y|1|2S|U|1267
3J6Y|1|2S|G|1268
3J6Y|1|2S|U|1269
3J6Y|1|2S|A|1270
3J6Y|1|2S|A|1271
3J6Y|1|2S|C|1272
3J6Y|1|2S|A|1273
3J6Y|1|2S|A|1274

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 80

60S ribosomal protein L40